Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10e17
         (857 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    25   0.58 
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    24   1.8  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   7.1  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   9.4  

>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 343 TTDLFSHIKKIFDELRLDTDC 281
           T+ L  H+ K+F+  R  TDC
Sbjct: 420 TSGLEKHVDKVFENARFFTDC 440


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 576 EPFLLYGS*YNIIAR 532
           +PFL +GS YN++ R
Sbjct: 33  KPFLFFGSFYNLVIR 47


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = +3

Query: 543 YYIMTHTIKMVHTLF*ILHC 602
           Y  + H +++  T+F ++HC
Sbjct: 519 YQSLAHYLRVFFTVFNVVHC 538


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -2

Query: 340 TDLFSHIKKIFDELRLDTDCYSIQRTYC 257
           TDL+  IKK F  L L       +  YC
Sbjct: 284 TDLYKKIKKAFPPLSLHGQLLWREFFYC 311


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,184
Number of Sequences: 336
Number of extensions: 4007
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23763101
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)