Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10e17
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    28   1.5  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    27   4.5  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    26   7.9  

>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/36 (36%), Positives = 25/36 (69%)
 Frame = -2

Query: 364 ILNVKDKTTDLFSHIKKIFDELRLDTDCYSIQRTYC 257
           +LN++++ +  +  IKK+F E RL+ D Y +++ YC
Sbjct: 440 LLNLENEESVEWRLIKKVF-EYRLNLDLYILKQFYC 474


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +1

Query: 241  IISKENNMFSEYYNSQCLISTRQISFLYAKINPSFYLSHLKY 366
            I+SK N + S++ +     + R+++ +  +IN S Y S+  Y
Sbjct: 1266 IVSKLNQILSDFRDDLLEHNVRRVTIVGGRINKSAYPSYYTY 1307


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
 Frame = +1

Query: 577 IHYSKSYIVPPQTWDSDVKML*LCIVVAVIDVRFFLQS*YWTKNGALCVLVSKIIMQ--S 750
           IH  K    P  T +  +     CI+   I   F+L + Y   +   C+L +K++++  +
Sbjct: 228 IHEKKHLKSPDITLEIAILKSMRCIIGQKIGTDFYLSNKYPIDSVVHCLLSTKLLVRKLA 287

Query: 751 YDIMTFYAVGYKRNSTKFSFAECLVRAXN 837
            +++TF     K N    +  +C+    N
Sbjct: 288 AELLTFLCYSEKPNGIN-AIMKCMKNFAN 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,230,387
Number of Sequences: 5004
Number of extensions: 63179
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)