Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10e17
(857 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49938-5|CAD31752.1| 1467|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z49938-1|CAD59171.1| 1216|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z46811-2|CAD31753.1| 1467|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical pr... 28 7.4
AF316540-1|AAK01633.1| 1487|Caenorhabditis elegans PTP-3B protein. 28 7.4
AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein. 28 7.4
AC024808-1|AAK29927.1| 309|Caenorhabditis elegans Hypothetical ... 28 7.4
AL021492-5|CAA16385.2| 157|Caenorhabditis elegans Hypothetical ... 28 9.8
>Z49938-5|CAD31752.1| 1467|Caenorhabditis elegans Hypothetical protein
C09D8.1b protein.
Length = 1467
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +3
Query: 576 HTLF*ILHCTSTNVGFGCENVMIVH-CSCSHRRKIFLTV-IILDKKR 710
H L + +T FGC + VH CS + R +F+ + IILD+ R
Sbjct: 1375 HFLDFVTQVHNTYAQFGCTGPITVHCCSGAGRTAVFIALSIILDRMR 1421
>Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical protein
C09D8.1a protein.
Length = 2180
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +3
Query: 576 HTLF*ILHCTSTNVGFGCENVMIVH-CSCSHRRKIFLTV-IILDKKR 710
H L + +T FGC + VH CS + R +F+ + IILD+ R
Sbjct: 2088 HFLDFVTQVHNTYAQFGCTGPITVHCCSGAGRTAVFIALSIILDRMR 2134
>Z49938-1|CAD59171.1| 1216|Caenorhabditis elegans Hypothetical protein
C09D8.1c protein.
Length = 1216
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +3
Query: 576 HTLF*ILHCTSTNVGFGCENVMIVH-CSCSHRRKIFLTV-IILDKKR 710
H L + +T FGC + VH CS + R +F+ + IILD+ R
Sbjct: 1124 HFLDFVTQVHNTYAQFGCTGPITVHCCSGAGRTAVFIALSIILDRMR 1170
>Z46811-2|CAD31753.1| 1467|Caenorhabditis elegans Hypothetical protein
C09D8.1b protein.
Length = 1467
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +3
Query: 576 HTLF*ILHCTSTNVGFGCENVMIVH-CSCSHRRKIFLTV-IILDKKR 710
H L + +T FGC + VH CS + R +F+ + IILD+ R
Sbjct: 1375 HFLDFVTQVHNTYAQFGCTGPITVHCCSGAGRTAVFIALSIILDRMR 1421
>Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical protein
C09D8.1a protein.
Length = 2180
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +3
Query: 576 HTLF*ILHCTSTNVGFGCENVMIVH-CSCSHRRKIFLTV-IILDKKR 710
H L + +T FGC + VH CS + R +F+ + IILD+ R
Sbjct: 2088 HFLDFVTQVHNTYAQFGCTGPITVHCCSGAGRTAVFIALSIILDRMR 2134
>AF316540-1|AAK01633.1| 1487|Caenorhabditis elegans PTP-3B protein.
Length = 1487
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +3
Query: 576 HTLF*ILHCTSTNVGFGCENVMIVH-CSCSHRRKIFLTV-IILDKKR 710
H L + +T FGC + VH CS + R +F+ + IILD+ R
Sbjct: 1395 HFLDFVTQVHNTYAQFGCTGPITVHCCSGAGRTAVFIALSIILDRMR 1441
>AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.
Length = 2200
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +3
Query: 576 HTLF*ILHCTSTNVGFGCENVMIVH-CSCSHRRKIFLTV-IILDKKR 710
H L + +T FGC + VH CS + R +F+ + IILD+ R
Sbjct: 2108 HFLDFVTQVHNTYAQFGCTGPITVHCCSGAGRTAVFIALSIILDRMR 2154
>AC024808-1|AAK29927.1| 309|Caenorhabditis elegans Hypothetical
protein Y53G8AM.4 protein.
Length = 309
Score = 28.3 bits (60), Expect = 7.4
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Frame = +3
Query: 543 YYIMTHTIKMVHTLF*ILHCTSTNVGFGCENVMIVHCSCSHRRKIF--LTVIILDKKRCV 716
Y++ + + + LF L+C S+ + FGC +V I R F V IL+ V
Sbjct: 97 YFLFGYGASIFYILFVALNCVSSILQFGCFHVYITSYKYHKYRAFFRGWFVPILNCLNFV 156
Query: 717 MC--FSVKNYYAIL*YYDI--LCSWLQKKFNQIFICRVF 821
+ F + + ++ +Y + L +L F+ +F ++F
Sbjct: 157 LALIFLINLNFNVISFYMVNSLIFYLAITFSLLFFKKIF 195
>AL021492-5|CAA16385.2| 157|Caenorhabditis elegans Hypothetical
protein Y45F10D.10 protein.
Length = 157
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +3
Query: 555 THTIKMVHTLF*ILHCTSTNVGFGCENVMIVHCSCSHRRKIFLTVIILDKKRCVMCFSVK 734
T +K+ L ++ T+ GFG N++ V S + R ++ L D ++C VK
Sbjct: 74 TRLVKLRIPLIELILLTTYADGFGRTNIVFVEKSTTTRYQLHLLQATDDASSNILCNLVK 133
Query: 735 NYY 743
N +
Sbjct: 134 NAF 136
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,591,462
Number of Sequences: 27780
Number of extensions: 349802
Number of successful extensions: 568
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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