Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10e14
         (344 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   3.6  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    21   3.6  
EF532798-1|ABQ08060.1|   50|Tribolium castaneum acetylcholineste...    20   8.2  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.0 bits (42), Expect = 3.6
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 69  SFDLGLLVNISNVTSTDSYGXQPAFLKNGASVLRTVIRF 185
           SF  GLLV I N   +         L++  ++L   IRF
Sbjct: 163 SFSTGLLVMIFNSALSYKASEIVVMLRSRFAILNKQIRF 201


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 21.0 bits (42), Expect = 3.6
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 69  SFDLGLLVNISNVTSTDSYGXQPAFLKNGASVLRTVIRF 185
           SF  GLLV I N   +         L++  ++L   IRF
Sbjct: 181 SFSTGLLVMIFNSALSYKASEIVVMLRSRFAILNKQIRF 219


>EF532798-1|ABQ08060.1|   50|Tribolium castaneum
           acetylcholinesterase protein.
          Length = 50

 Score = 19.8 bits (39), Expect = 8.2
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 119 QLWXPTSLLEERCLRL 166
           ++W P + + E CL L
Sbjct: 1   EMWNPNTNISEDCLYL 16


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,125
Number of Sequences: 336
Number of extensions: 1164
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6770240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)