Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10e14
(344 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0248 + 21680237-21680392,21680450-21681141,21681397-216817... 28 1.7
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406... 28 1.7
11_01_0207 - 1620192-1620280,1620408-1620451,1620703-1620791,162... 27 3.9
01_01_1157 - 9203448-9203560,9204725-9204768,9205345-9205433,920... 27 3.9
12_01_0208 - 1567000-1567064,1567192-1567235,1567488-1567576,156... 27 5.2
11_01_0191 + 1508509-1508749,1508852-1509204,1509860-1510002,151... 27 5.2
12_01_0625 - 5142174-5142244,5142328-5142385,5143921-5143959,514... 26 9.1
08_02_1232 + 25429955-25430392,25430885-25431388,25432657-254328... 26 9.1
04_04_1396 + 33227126-33227846,33228530-33228637,33228825-33230029 26 9.1
04_01_0632 - 8384166-8384195,8385316-8385724,8386171-8386271 26 9.1
>11_06_0248 +
21680237-21680392,21680450-21681141,21681397-21681724,
21681945-21682801,21682928-21683378,21683761-21684066,
21684136-21684456,21684539-21684745,21685568-21685810
Length = 1186
Score = 28.3 bits (60), Expect = 1.7
Identities = 21/54 (38%), Positives = 27/54 (50%)
Frame = +3
Query: 33 GPFGTE*TSLXISFDLGLLVNISNVTSTDSYGXQPAFLKNGASVLRTVIRFRFL 194
G F +S DLG +VN+ N+ T S G QPA LK SVL + + L
Sbjct: 592 GCFDLSGSSTESIVDLGKMVNLQNLHMTCSSG-QPANLKLLGSVLNKLKNMKSL 644
>08_01_0461 -
4063614-4064375,4064439-4066017,4066041-4066086,
4066416-4066933,4067435-4067694,4068089-4068594,
4068667-4071319
Length = 2107
Score = 28.3 bits (60), Expect = 1.7
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +2
Query: 113 YRQLWXPTSLLEERCLRLKNRHSFSFLNVKRRFLNCSKT-ADVNGLRDIYFTSITLLSAP 289
Y L P LEE S SF + ++ + T A V ++D+ + LS+P
Sbjct: 16 YTSLVFPKQYLEELARVPTEVSSSSFFSQLNNLISLTSTYAQVIAVKDLASAFVQFLSSP 75
Query: 290 TMSDDGV 310
+ DD V
Sbjct: 76 AIPDDAV 82
>11_01_0207 -
1620192-1620280,1620408-1620451,1620703-1620791,
1620870-1620914,1621441-1621548,1621638-1621723,
1622202-1622289,1622403-1622576,1623084-1623159,
1623256-1623305,1623392-1623454,1623689-1623791,
1623871-1623973,1624679-1624739,1624864-1624904,
1625076-1625154
Length = 432
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +3
Query: 258 ILPRSPYYLPLRCLTMV-LIIVVSTTFL 338
I R PY+LP C++++ L++++S +L
Sbjct: 164 IFGRFPYFLPCLCISLIALVVLISCIWL 191
>01_01_1157 -
9203448-9203560,9204725-9204768,9205345-9205433,
9205565-9205609,9205805-9205912,9206003-9206088,
9206492-9206579,9206725-9206910,9207181-9207256,
9207332-9207381,9207715-9207777,9207882-9207962,
9208028-9208130,9208246-9208348,9208489-9208549,
9209059-9209154,9209185-9209225,9209848-9209922,
9210412-9210562
Length = 552
Score = 27.1 bits (57), Expect = 3.9
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3
Query: 258 ILPRSPYYLPLRCLTMVLIIVVSTTF 335
I R PY+LP C++++ I+ + +F
Sbjct: 272 IFGRFPYFLPCLCISLLAIVALLASF 297
>12_01_0208 -
1567000-1567064,1567192-1567235,1567488-1567576,
1568219-1568326,1568416-1568501,1568969-1569056,
1569171-1569344,1569844-1569919,1570003-1570052,
1570140-1570202,1570285-1570338,1570433-1570535,
1570615-1570666,1570849-1570909,1571034-1571074,
1571245-1571323
Length = 410
Score = 26.6 bits (56), Expect = 5.2
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +3
Query: 258 ILPRSPYYLPLRCLTMV-LIIVVSTTFL 338
I R PY+LP C++++ L++++S +L
Sbjct: 165 IFGRFPYFLPCICISLIALVVLISCIWL 192
>11_01_0191 +
1508509-1508749,1508852-1509204,1509860-1510002,
1510195-1510256,1510406-1510479,1510812-1510864,
1511072-1513550
Length = 1134
Score = 26.6 bits (56), Expect = 5.2
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 296 SDDGVNNCGFYNIFN 340
S DG +CGFYNI N
Sbjct: 367 SSDGTFSCGFYNITN 381
>12_01_0625 -
5142174-5142244,5142328-5142385,5143921-5143959,
5145730-5146710
Length = 382
Score = 25.8 bits (54), Expect = 9.1
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 143 LEERCLRLKNR-HSFSFLNVKRRFLNCSKTADVNGLR 250
L +R +K R FSF+ + R + +CS+TA +GLR
Sbjct: 100 LNQRLDGIKQRAEQFSFIKLDR-YGDCSRTAQGHGLR 135
>08_02_1232 +
25429955-25430392,25430885-25431388,25432657-25432803,
25432999-25433106,25433242-25433331
Length = 428
Score = 25.8 bits (54), Expect = 9.1
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
Frame = +2
Query: 269 ITLLSAPTM-----SDDGVNNCGFYNIFN 340
ITL SAP S+D NNCG Y + N
Sbjct: 351 ITLFSAPDYPQFQASEDRYNNCGAYIVLN 379
>04_04_1396 + 33227126-33227846,33228530-33228637,33228825-33230029
Length = 677
Score = 25.8 bits (54), Expect = 9.1
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = +2
Query: 152 RCLRLKNRHSFSFLNVKRRFLNCSKTADVN-----GLRDI 256
RCL L + ++ LN RR NCS+ + N G RDI
Sbjct: 203 RCLSLHSSSYYNDLNYDRRRCNCSQGYEGNPYIRDGCRDI 242
>04_01_0632 - 8384166-8384195,8385316-8385724,8386171-8386271
Length = 179
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 131 PTSLLEERCLRLKNRHSFSFLNVKRRFLNCSKTADVNG 244
PTS L E K RH + V+R+ L+ + + +NG
Sbjct: 103 PTSSLSEGSAECKGRHLRALAAVERQALHHNPSTQLNG 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,600,078
Number of Sequences: 37544
Number of extensions: 116931
Number of successful extensions: 222
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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