Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10e14
         (344 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70270-11|CAJ80821.1|  606|Caenorhabditis elegans Hypothetical p...    27   2.7  
Z70270-10|CAA94231.1|  726|Caenorhabditis elegans Hypothetical p...    27   2.7  
Z68215-18|CAJ80818.1|  606|Caenorhabditis elegans Hypothetical p...    27   2.7  
Z68215-17|CAA92458.1|  726|Caenorhabditis elegans Hypothetical p...    27   2.7  
U20861-3|AAA62295.1|  283|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z70683-4|CAC42282.1|  109|Caenorhabditis elegans Hypothetical pr...    26   6.3  
AF070472-1|AAC33275.1|  109|Caenorhabditis elegans insulin-like ...    26   6.3  

>Z70270-11|CAJ80821.1|  606|Caenorhabditis elegans Hypothetical
           protein C53B4.8b protein.
          Length = 606

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 164 LKNRHSFSFLNVKRRFLNCSKTADVNGLRDIYFTSIT 274
           L N  +  F+N K  F+N ++   + G R IY TS++
Sbjct: 488 LTNSQNLDFVNKKFTFMNKNQMETLYGERGIYNTSVS 524


>Z70270-10|CAA94231.1|  726|Caenorhabditis elegans Hypothetical
           protein C53B4.8a protein.
          Length = 726

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 164 LKNRHSFSFLNVKRRFLNCSKTADVNGLRDIYFTSIT 274
           L N  +  F+N K  F+N ++   + G R IY TS++
Sbjct: 488 LTNSQNLDFVNKKFTFMNKNQMETLYGERGIYNTSVS 524


>Z68215-18|CAJ80818.1|  606|Caenorhabditis elegans Hypothetical
           protein C53B4.8b protein.
          Length = 606

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 164 LKNRHSFSFLNVKRRFLNCSKTADVNGLRDIYFTSIT 274
           L N  +  F+N K  F+N ++   + G R IY TS++
Sbjct: 488 LTNSQNLDFVNKKFTFMNKNQMETLYGERGIYNTSVS 524


>Z68215-17|CAA92458.1|  726|Caenorhabditis elegans Hypothetical
           protein C53B4.8a protein.
          Length = 726

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 164 LKNRHSFSFLNVKRRFLNCSKTADVNGLRDIYFTSIT 274
           L N  +  F+N K  F+N ++   + G R IY TS++
Sbjct: 488 LTNSQNLDFVNKKFTFMNKNQMETLYGERGIYNTSVS 524


>U20861-3|AAA62295.1|  283|Caenorhabditis elegans Hypothetical
           protein C28H8.7 protein.
          Length = 283

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 15  DLPTLCGPFGTE*TSLXISFDLGLLVNISNVTSTDSYGXQPAFLK 149
           +LPT    +GT   S  I +D G L N  N + +   G    +LK
Sbjct: 140 ELPTDLKTYGTHLNSSNIYWDYGSLANYLNQSESAGIGHFSTYLK 184


>Z70683-4|CAC42282.1|  109|Caenorhabditis elegans Hypothetical
           protein F13B12.5 protein.
          Length = 109

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 260 FTSITLLSAPTMSDDGVNNCG 322
           F +I LLS+PT SD  +  CG
Sbjct: 16  FLAILLLSSPTPSDASIRLCG 36


>AF070472-1|AAC33275.1|  109|Caenorhabditis elegans insulin-like
           peptide protein.
          Length = 109

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 260 FTSITLLSAPTMSDDGVNNCG 322
           F +I LLS+PT SD  +  CG
Sbjct: 16  FLAILLLSSPTPSDASIRLCG 36


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,836,403
Number of Sequences: 27780
Number of extensions: 113008
Number of successful extensions: 199
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)