Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10e14
         (344 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    20   7.2  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    20   9.5  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    20   9.5  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    20   9.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    20   9.5  

>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 179 SFSFLNVKRRFLNC 220
           SFS LN    F NC
Sbjct: 143 SFSLLNFNLLFFNC 156


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +2

Query: 236 VNGLRDIYFTSITLLSAPTMSDDGVNNCGFYN 331
           V  LR + +  +  +  P    DG+N C   N
Sbjct: 9   VMSLRALKYPMVVHVYHPYRQPDGMNQCQAVN 40


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +2

Query: 236 VNGLRDIYFTSITLLSAPTMSDDGVNNCGFYN 331
           V  LR + +  +  +  P    DG+N C   N
Sbjct: 9   VMSLRALKYPMVVHVYHPYRQPDGMNQCQAVN 40


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 119 QLWXPTSLLEERCLRL 166
           ++W P + + E CL L
Sbjct: 114 EMWNPNTNISEDCLYL 129


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 119 QLWXPTSLLEERCLRL 166
           ++W P + + E CL L
Sbjct: 114 EMWNPNTNISEDCLYL 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,096
Number of Sequences: 438
Number of extensions: 1360
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)