Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10e13
         (438 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    49   4e-07
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    48   8e-07
SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyc...    30   0.18 
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    27   1.3  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    27   1.7  
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    27   1.7  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    26   2.9  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    25   6.7  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    25   6.7  
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    24   8.9  
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo...    24   8.9  

>SPBC947.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 100

 Score = 48.8 bits (111), Expect = 4e-07
 Identities = 23/51 (45%), Positives = 29/51 (56%)
 Frame = -1

Query: 264 VVEEEGKAKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLK 112
           ++ E G+  L  WLN    IE+ D R  IG FLCTDR+   IL   +EY K
Sbjct: 43  LIMENGEILLTSWLNRSVHIEIFDERKFIGKFLCTDREGAAILSNTTEYNK 93


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 47.6 bits (108), Expect = 8e-07
 Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
 Frame = -1

Query: 249 GKAKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEY---LKNN---EGETEE 88
           G  K+   LN    +   DGR  +G  L  D   N++L  C EY    K N       EE
Sbjct: 2   GTTKMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEYRHIKKQNVPSNSVYEE 61

Query: 87  PRVLGLVMVPGRHIVSIQIDDTTP 16
            R+LGLV++ G  IVS+ +    P
Sbjct: 62  KRMLGLVILRGEFIVSLSVQGPPP 85


>SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 140

 Score = 29.9 bits (64), Expect = 0.18
 Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
 Frame = -1

Query: 279 SEAPQVVEEEGKAKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSE--YLKNN 106
           ++A Q++       L  +++ K  + + DG+ LIG+    D+ AN++L    E  Y+ + 
Sbjct: 2   NQATQIIPFTTSGSLVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDDM 61

Query: 105 EGETEEPRVLGLVMVPGRHIV 43
            G+ +     G+ +V G ++V
Sbjct: 62  YGDIDR----GVYIVRGENVV 78


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 95   VSPSLFFKYSEQAPKITFASLSVHRNTPIRTL-PSVISI 208
            +  SLF K+S Q   I   + ++ + TP+ TL P ++ +
Sbjct: 1489 IDTSLFAKFSSQFQNIIAKNFNMDKKTPVPTLSPEILEL 1527


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -1

Query: 171 FLCTDRDANVILGACSEYLKNNEGETEEPRVLGLV 67
           ++C  RDA+ ++   SEY KN  GE+  P ++ LV
Sbjct: 483 YVCDSRDADCVVKIWSEYTKNT-GES-SPVLVALV 515


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 56  PGTMTRPNTLGSSVSPSLFFKYSEQAPKITFASLSVHRNTPIRTLPSVIS 205
           P T+  P+T    +  S+   Y+   P++  +S S+  N   + LPS +S
Sbjct: 202 PSTVHAPSTRQRDLKSSILSLYASPRPQV--SSSSITTNATYQNLPSPVS 249


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 83  LGSSVSPSLFFKYSEQAPKITFASLSVHRN 172
           LG+  +P +FF   ++     F +LS+H+N
Sbjct: 706 LGACTTPDVFFAGIKEESLPAFENLSIHKN 735


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -2

Query: 437 NLGFLLQWCNHVPGYKIMPYKNTSRL*QETRLLFRD 330
           NL  +  WC+  P +++   KN+ ++   +RL+  D
Sbjct: 121 NLMIIASWCDSFPKFRVEVLKNSKQI---SRLIHSD 153


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 21/79 (26%), Positives = 35/79 (44%)
 Frame = +2

Query: 53  LPGTMTRPNTLGSSVSPSLFFKYSEQAPKITFASLSVHRNTPIRTLPSVISILNFIFNHF 232
           LP   T      +S S ++   YS    +IT ++ SV+  T        I++     +  
Sbjct: 154 LPTNPTTTAIYSTSGSSNITTPYSN---RITNSNTSVNDITSKYLSVGTITLTTISGSDL 210

Query: 233 LSFAFPSSSTT*GASEVVL 289
            +  FP++ TT G  EVV+
Sbjct: 211 YTSTFPANGTTSGTVEVVI 229


>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 159 DRDANVILGACSEYLKN 109
           D DA V+ G+C  YL+N
Sbjct: 300 DTDALVVDGSCKNYLRN 316


>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +2

Query: 14  DGVVSSICIDTMCLPGTMTR---PNTLGSSVSPSLFFKYSEQAP 136
           D +V + CI+  C P T+     P ++ +SV+  +     +Q P
Sbjct: 156 DSIVHNACIERDCFPSTLNYYAFPKSVCTSVNEIICHGIPDQRP 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,695,103
Number of Sequences: 5004
Number of extensions: 30898
Number of successful extensions: 105
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)