Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10e11
         (812 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1CDE8 Cluster: Cyclin-dependent protein kinase complex...    37   0.53 
UniRef50_Q15RI8 Cluster: Tetratricopeptide TPR_2; n=1; Pseudoalt...    34   4.9  

>UniRef50_A1CDE8 Cluster: Cyclin-dependent protein kinase complex
           component (Pcl7), putative; n=8; Pezizomycotina|Rep:
           Cyclin-dependent protein kinase complex component
           (Pcl7), putative - Aspergillus clavatus
          Length = 540

 Score = 37.1 bits (82), Expect = 0.53
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = +2

Query: 515 MHYRQLWR-MTPPDDTSLASPIIAAIFLYFVGNCAPDIQFL-FFCRLHRYNRNLYIIWLR 688
           MH+ Q+ R + PPD T+  SP   ++ L F G   P I  L +  R+H+Y    Y ++L 
Sbjct: 261 MHHEQVHRHIPPPDSTANLSPQATSV-LAFHGKNVPSISILSYLTRIHKYCPTTYEVFLS 319

Query: 689 L 691
           L
Sbjct: 320 L 320


>UniRef50_Q15RI8 Cluster: Tetratricopeptide TPR_2; n=1;
           Pseudoalteromonas atlantica T6c|Rep: Tetratricopeptide
           TPR_2 - Pseudoalteromonas atlantica (strain T6c /
           BAA-1087)
          Length = 548

 Score = 33.9 bits (74), Expect = 4.9
 Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = -3

Query: 786 CFHH-KMPICYQXNLKNVKKSCSCWSYVLVLQPNLSHIMYKFLLYL*R 646
           CF++ K  +CY+  +  +K+  SC+  ++  +P+ ++  Y F +YL R
Sbjct: 72  CFYYEKAELCYKRGM--IKEGISCYEKLIARRPDYANARYNFAIYLKR 117


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 732,533,642
Number of Sequences: 1657284
Number of extensions: 14355938
Number of successful extensions: 30725
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 29885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30720
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 70377768045
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)