Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10e11
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    29   0.79 
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    28   1.4  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    26   5.5  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    26   5.5  
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    26   7.3  
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||...    25   9.7  

>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -1

Query: 680 ILCISFCCTYEDDKKTRTGYRARNYLRNIGKWQL*SETLKKCRPAVS 540
           +  I   C YED++  R GY   N +  +   ++    +KK +  +S
Sbjct: 93  VTVILLSCAYEDNEFVRVGYYVNNEMEGLNLQEMDDAEIKKVKVDIS 139


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -2

Query: 259 NPICPTHPLGADTSYEVWHPVRKVEFILDS*AIYHKVGS 143
           NPI P+  +  D  Y+ +HP+  + +++    +Y K G+
Sbjct: 484 NPILPSLSMNTDI-YDAFHPLISIYYLVSERRVYEKGGN 521


>SPBC2F12.05c |||sterol binding ankyrin repeat
            protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 247  PTHPLGADTSYEVWHPVRKVEFILDS*AIYHKVGSELVQPPNHK 116
            P +PL  +T YE  HP R   FI++  + +  VG+   +  N K
Sbjct: 1013 PFNPLLGET-YEFCHPQRGFRFIVEQVSHHPPVGAAYSESANWK 1055


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 683 AILCISFCCTYEDDKKTR 630
           A +C SF C + DD KTR
Sbjct: 53  AYICTSFLCFHSDDFKTR 70


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +1

Query: 433 FRCGSHSGRIRRCCWCPEISRW 498
           F  G H+ RI    WCP   RW
Sbjct: 376 FMHGGHTNRISEFSWCPN-ERW 396


>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +3

Query: 372 VQNSDRVEGVEMIVDDTMSAVPVRQSFR 455
           +QN D+ E  ++I+D T++AVP R S +
Sbjct: 77  LQNIDQKEDEDLILD-TLNAVPARTSHK 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,035,647
Number of Sequences: 5004
Number of extensions: 59846
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)