Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10e11
         (812 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00047-13|AAY43978.1|  301|Caenorhabditis elegans Hypothetical p...    29   4.0  
AF099916-2|AAC68776.1| 1145|Caenorhabditis elegans Hypothetical ...    28   6.9  
AJ276028-1|CAC81655.1|  816|Caenorhabditis elegans TRP homlogous...    28   9.1  
AF040654-5|AAN65302.2|  816|Caenorhabditis elegans Trp (transien...    28   9.1  
AF040654-4|AAN65303.2|  886|Caenorhabditis elegans Trp (transien...    28   9.1  

>U00047-13|AAY43978.1|  301|Caenorhabditis elegans Hypothetical
           protein ZK418.11 protein.
          Length = 301

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/34 (38%), Positives = 24/34 (70%)
 Frame = +2

Query: 35  KRVYQEYIIIYISTICMCD*NYKYSLFFMIRWLN 136
           KR+ +EY+ IY+ST+ + + N+++     IR+LN
Sbjct: 230 KRIIEEYLSIYLSTLGI-NCNFRFQKHGRIRYLN 262


>AF099916-2|AAC68776.1| 1145|Caenorhabditis elegans Hypothetical
           protein F54C4.3 protein.
          Length = 1145

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 308 WGPIHQTTSLELSHPT 355
           WGP+H+TT    +HPT
Sbjct: 681 WGPLHRTTLTSHAHPT 696


>AJ276028-1|CAC81655.1|  816|Caenorhabditis elegans TRP homlogous
           cation channel proteinprotein.
          Length = 816

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +2

Query: 575 IIAAIFLYFVGNCAPDIQFLFFCRLHRYNRNLYII 679
           I  AIFL+ +G    +I+ L+ C L+ Y RNL+ I
Sbjct: 417 IECAIFLWVLGLIWVEIKQLWECGLYNYCRNLWNI 451


>AF040654-5|AAN65302.2|  816|Caenorhabditis elegans Trp (transient
           receptor potential)channel family protein 2, isoform a
           protein.
          Length = 816

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +2

Query: 575 IIAAIFLYFVGNCAPDIQFLFFCRLHRYNRNLYII 679
           I  AIFL+ +G    +I+ L+ C L+ Y RNL+ I
Sbjct: 417 IECAIFLWVLGLIWVEIKQLWECGLYNYCRNLWNI 451


>AF040654-4|AAN65303.2|  886|Caenorhabditis elegans Trp (transient
           receptor potential)channel family protein 2, isoform b
           protein.
          Length = 886

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +2

Query: 575 IIAAIFLYFVGNCAPDIQFLFFCRLHRYNRNLYII 679
           I  AIFL+ +G    +I+ L+ C L+ Y RNL+ I
Sbjct: 417 IECAIFLWVLGLIWVEIKQLWECGLYNYCRNLWNI 451


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,842,694
Number of Sequences: 27780
Number of extensions: 339067
Number of successful extensions: 713
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)