Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10e09
         (540 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0AY93 Cluster: Putative uncharacterized protein; n=1; ...    34   2.4  
UniRef50_Q1LGZ7 Cluster: Transcriptional regulator, LysR family;...    33   4.2  
UniRef50_Q1D3J0 Cluster: Putative uncharacterized protein; n=2; ...    32   7.3  
UniRef50_A7C413 Cluster: Transposase, IS630; n=3; Beggiatoa sp. ...    32   7.3  
UniRef50_Q72BW0 Cluster: Putative uncharacterized protein; n=1; ...    32   9.7  
UniRef50_Q7RA42 Cluster: Putative uncharacterized protein PY0666...    32   9.7  

>UniRef50_Q0AY93 Cluster: Putative uncharacterized protein; n=1;
           Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep:
           Putative uncharacterized protein - Syntrophomonas wolfei
           subsp. wolfei (strain Goettingen)
          Length = 706

 Score = 33.9 bits (74), Expect = 2.4
 Identities = 23/59 (38%), Positives = 33/59 (55%)
 Frame = +1

Query: 115 SLQVLRSELLGRRTESVEFQMYVPAPRAKSRKQRKREVIRTQWLKCICHLTSH*TYLIA 291
           SL  L++  LG+R ES+EF+    A    ++ Q ++E IR Q L+ I   TS    LIA
Sbjct: 607 SLFKLKTRYLGKRVESLEFRQIQLADSKTAQAQNEKEKIRLQ-LQEIAEFTSKIDELIA 664


>UniRef50_Q1LGZ7 Cluster: Transcriptional regulator, LysR family;
           n=2; Burkholderiaceae|Rep: Transcriptional regulator,
           LysR family - Ralstonia metallidurans (strain CH34 /
           ATCC 43123 / DSM 2839)
          Length = 406

 Score = 33.1 bits (72), Expect = 4.2
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -1

Query: 189 RRHIHLEFDTLRSPAKQLTTQHLKGSLLSNINLSVIRPI 73
           RRH HL F TL SP ++LT   L G +  +  L  +RP+
Sbjct: 217 RRHPHLRFRTLESPYEELTAGLLAGRI--DFILGAVRPL 253


>UniRef50_Q1D3J0 Cluster: Putative uncharacterized protein; n=2;
           Cystobacterineae|Rep: Putative uncharacterized protein -
           Myxococcus xanthus (strain DK 1622)
          Length = 173

 Score = 32.3 bits (70), Expect = 7.3
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 121 QVLRSELLGRRTESVEFQMYVPAPRAKSRKQRKR 222
           ++ + E  G RTE V+ +  VP P A S++ RKR
Sbjct: 138 RLAKLEATGTRTEPVKTEQQVPTPAASSKRTRKR 171


>UniRef50_A7C413 Cluster: Transposase, IS630; n=3; Beggiatoa sp.
           PS|Rep: Transposase, IS630 - Beggiatoa sp. PS
          Length = 202

 Score = 32.3 bits (70), Expect = 7.3
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -1

Query: 171 EFDTLRSPAKQLTTQHLKGSLLSNINLSVIRPIIVINIMFL 49
           EF+  +   K+LT QH  G +   + + ++ P+++ N MFL
Sbjct: 153 EFEAAQEELKELTKQHKDGDIELWVGILLMNPVLINNQMFL 193


>UniRef50_Q72BW0 Cluster: Putative uncharacterized protein; n=1;
           Desulfovibrio vulgaris subsp. vulgaris str.
           Hildenborough|Rep: Putative uncharacterized protein -
           Desulfovibrio vulgaris (strain Hildenborough / ATCC
           29579 / NCIMB8303)
          Length = 298

 Score = 31.9 bits (69), Expect = 9.7
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = -1

Query: 180 IHLEFDTLRSPAKQLTTQHLKGSLLSNINL 91
           I +E+D +R PA Q T +HLKG + ++ NL
Sbjct: 263 IQIEYDAMREPAVQQTLRHLKG-MCASFNL 291


>UniRef50_Q7RA42 Cluster: Putative uncharacterized protein PY06663;
           n=1; Plasmodium yoelii yoelii|Rep: Putative
           uncharacterized protein PY06663 - Plasmodium yoelii
           yoelii
          Length = 216

 Score = 31.9 bits (69), Expect = 9.7
 Identities = 13/43 (30%), Positives = 28/43 (65%)
 Frame = -1

Query: 450 NILLYILLNEMFGILFSTAVMKLSILRVMLCLFNSFN*FQIYK 322
           NI+++ + + +F I + T +    +L ++L LFN+++ F +YK
Sbjct: 169 NIIIFFIYDLIFFIYYLTVINYKDLLFMILLLFNTYHPFFVYK 211


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 469,653,412
Number of Sequences: 1657284
Number of extensions: 8289956
Number of successful extensions: 19266
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19264
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34572633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)