Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10e09
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|c...    27   1.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   4.1  
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    25   5.4  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   7.2  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    25   9.5  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   9.5  
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi...    25   9.5  

>SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 456 PSNILLYILLNEMFGILFSTAVMKLSILRVMLCLFN 349
           P N  +Y LLNE    L S  +MK  +    LCL N
Sbjct: 261 PRNHYIY-LLNEQVDFLTSIEIMKNQVTEGKLCLLN 295


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 192 GRRHIHLEFDTLRSPAKQLTTQHLKGSLLSN 100
           G  ++HL+++    P K LTT+  K S   N
Sbjct: 535 GLTYLHLDYNCNLKPTKTLTTKERKKSRFGN 565


>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 17/58 (29%), Positives = 23/58 (39%)
 Frame = +2

Query: 56  IMLMTMIGRITDRLMLDSRDPFRCCVVSCLAGERRVSNSKCMCRRPGQSHANKGREKL 229
           I   T I  +  +  LDS  PF C   S       +SN + M   P  S++    E L
Sbjct: 109 IFYQTCISELISKFQLDSYRPFFCKWTSSATVSSTISNDE-MSSIPEASYSRNHMEAL 165


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 37  CDKV*KHYVNDNDRTYYRQV 96
           C K  KHYV +ND  Y  +V
Sbjct: 574 CQKCTKHYVLENDSLYKNRV 593


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 279 IFNSKSKQSILVNLIYK 329
           +FN++SK S+ +NL YK
Sbjct: 202 LFNNQSKSSLKINLEYK 218


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -1

Query: 84   IRPIIVINIMFLNFVASHCYRML 16
            +R I+V+   F  F+A+HCY+++
Sbjct: 1815 LRIILVLLHDFPGFLATHCYQLI 1837


>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
           Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 463 KRLALTKILTTKIHENIVYLQKCKC 537
           K   LT++  T  HEN+ YL+  KC
Sbjct: 72  KECNLTEVFNTT-HENVKYLKGIKC 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,047,286
Number of Sequences: 5004
Number of extensions: 37967
Number of successful extensions: 87
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)