Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10e09
         (540 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-1444|AAS64658.1| 1679|Drosophila melanogaster CG8086-PD...    31   1.3  
AE013599-2346|AAM70888.1|  702|Drosophila melanogaster CG5522-PE...    30   2.3  
AE013599-2345|AAF57952.1|  702|Drosophila melanogaster CG5522-PB...    30   2.3  
AE013599-2344|AAM70887.1|  702|Drosophila melanogaster CG5522-PA...    30   2.3  
M17155-1|AAA70217.1|  359|Drosophila melanogaster potassium chan...    28   9.4  

>AE014134-1444|AAS64658.1| 1679|Drosophila melanogaster CG8086-PD,
            isoform D protein.
          Length = 1679

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 208  CVTLPWAPAHTFGIRHSPFAGQ 143
            CV L   PA++FGI+HS + G+
Sbjct: 1642 CVNLSHVPAYSFGIKHSQYLGR 1663


>AE013599-2346|AAM70888.1|  702|Drosophila melanogaster CG5522-PE,
           isoform E protein.
          Length = 702

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 122 RCCVVSCLAGERRVSNSKCMCRR 190
           +CC+V    G   +SN +C CRR
Sbjct: 477 QCCIVMIAPGIGTISNKRCRCRR 499


>AE013599-2345|AAF57952.1|  702|Drosophila melanogaster CG5522-PB,
           isoform B protein.
          Length = 702

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 122 RCCVVSCLAGERRVSNSKCMCRR 190
           +CC+V    G   +SN +C CRR
Sbjct: 477 QCCIVMIAPGIGTISNKRCRCRR 499


>AE013599-2344|AAM70887.1|  702|Drosophila melanogaster CG5522-PA,
           isoform A protein.
          Length = 702

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 122 RCCVVSCLAGERRVSNSKCMCRR 190
           +CC+V    G   +SN +C CRR
Sbjct: 477 QCCIVMIAPGIGTISNKRCRCRR 499


>M17155-1|AAA70217.1|  359|Drosophila melanogaster potassium channel
           protein protein.
          Length = 359

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +1

Query: 130 RSELLGRRTESVEFQMYVPAPRAKSRKQRKREVIRTQWLKC 252
           RS   G R+ESV FQ   P P     +Q +R      WL C
Sbjct: 71  RSAPHGERSESVRFQRAQPEPVFAQIEQSRRRRGGWSWLWC 111


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,258,814
Number of Sequences: 53049
Number of extensions: 387853
Number of successful extensions: 883
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 2053700352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)