Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10e09
         (540 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical ...    29   1.6  
Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p...    28   3.7  
U97552-6|AAX55683.1|  216|Caenorhabditis elegans Hypothetical pr...    27   6.5  
U55371-2|AAL02524.1|  402|Caenorhabditis elegans Hypothetical pr...    27   6.5  
U55371-1|AAL02525.1|  432|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AY919615-1|AAY16564.1|  432|Caenorhabditis elegans FLP-2 recepto...    27   6.5  
AY919614-1|AAY16563.1|  402|Caenorhabditis elegans FLP-2 recepto...    27   6.5  
U41532-2|AAV28353.1|  292|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AL032643-5|CAA21656.1|  622|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical
           protein Y54E10A.11 protein.
          Length = 1446

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -1

Query: 165 DTLRSPAKQLTTQHLKGSLLSN--INLSVIR 79
           D+L  PAK L   HL G+LLSN  ++  +IR
Sbjct: 482 DSLTLPAKHLELAHLHGNLLSNPDVDFHIIR 512


>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
           protein T20D3.11 protein.
          Length = 1843

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -3

Query: 193 WAPAHTFGIRHSPFAGQAAHYAAPEGIPAI*H*PVCNTSYHCH*HN 56
           W+P H FG++ +P           + +P   H P  N+S H   HN
Sbjct: 39  WSPKHWFGVKGNPDDILKLPLHFDDQLPTSSHHPPLNSSSHHSNHN 84


>U97552-6|AAX55683.1|  216|Caenorhabditis elegans Hypothetical
           protein W05H7.4c protein.
          Length = 216

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 224 SLFLCLRDFALGAGTYIWN 168
           S+FLC+R F   A ++IWN
Sbjct: 180 SIFLCVRSFFADALSFIWN 198


>U55371-2|AAL02524.1|  402|Caenorhabditis elegans Hypothetical
           protein T19F4.1a protein.
          Length = 402

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = -1

Query: 447 ILLYILLNEMFGILFSTAVMKLSILRVMLCLFNSFN*FQIYKSNLPEYFV 298
           +L+ I  N +  ILFS   M+ S + V+LC  + F+ F +   ++P + +
Sbjct: 15  VLVGIFGNSLSFILFSRPHMRSSSVNVLLCALSFFD-FSLLTLSIPIFVI 63


>U55371-1|AAL02525.1|  432|Caenorhabditis elegans Hypothetical
           protein T19F4.1b protein.
          Length = 432

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = -1

Query: 447 ILLYILLNEMFGILFSTAVMKLSILRVMLCLFNSFN*FQIYKSNLPEYFV 298
           +L+ I  N +  ILFS   M+ S + V+LC  + F+ F +   ++P + +
Sbjct: 15  VLVGIFGNSLSFILFSRPHMRSSSVNVLLCALSFFD-FSLLTLSIPIFVI 63


>AY919615-1|AAY16564.1|  432|Caenorhabditis elegans FLP-2 receptor
           protein.
          Length = 432

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = -1

Query: 447 ILLYILLNEMFGILFSTAVMKLSILRVMLCLFNSFN*FQIYKSNLPEYFV 298
           +L+ I  N +  ILFS   M+ S + V+LC  + F+ F +   ++P + +
Sbjct: 15  VLVGIFGNSLSFILFSRPHMRSSSVNVLLCALSFFD-FSLLTLSIPIFVI 63


>AY919614-1|AAY16563.1|  402|Caenorhabditis elegans FLP-2 receptor
           protein.
          Length = 402

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = -1

Query: 447 ILLYILLNEMFGILFSTAVMKLSILRVMLCLFNSFN*FQIYKSNLPEYFV 298
           +L+ I  N +  ILFS   M+ S + V+LC  + F+ F +   ++P + +
Sbjct: 15  VLVGIFGNSLSFILFSRPHMRSSSVNVLLCALSFFD-FSLLTLSIPIFVI 63


>U41532-2|AAV28353.1|  292|Caenorhabditis elegans Hypothetical
           protein F11D5.7 protein.
          Length = 292

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -1

Query: 465 FKFPSNILLYILLNEMFGILFSTAVMKLSILRVMLCLFNS 346
           F  PSNILL I+L  +F ++    ++  S+L  ++   N+
Sbjct: 3   FYVPSNILLMIVLFLLFDVITQIQLITFSVLSEIITEMNN 42


>AL032643-5|CAA21656.1|  622|Caenorhabditis elegans Hypothetical
           protein Y54E5A.7 protein.
          Length = 622

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +3

Query: 147 PANGECRIPNVCAGAQGKVTQTKEERSYKNAMVEVHLPFNVTLDIFNSKSKQSI 308
           P     R P +  G+Q K T+   E   ++A  +VH P  V L   N+K+ + +
Sbjct: 354 PTEIRARPPKLLKGSQCKTTKRTREAQRRSANSQVHTPPPVRLT--NAKATEEL 405


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,302,305
Number of Sequences: 27780
Number of extensions: 211959
Number of successful extensions: 544
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)