Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10e08
         (547 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0024 + 16556026-16556588,16556757-16556868                       29   2.4  
11_01_0204 - 1612505-1612636,1612809-1612926,1613050-1613162,161...    29   3.2  
07_03_1363 - 26022333-26023225,26023319-26023451                       28   4.2  
09_01_0037 - 604001-604957                                             27   9.8  
03_01_0195 - 1548204-1548257,1548547-1548642,1548726-1548770,154...    27   9.8  

>03_04_0024 + 16556026-16556588,16556757-16556868
          Length = 224

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +1

Query: 229 ISLFHPG*VDLFELPSPWLPEVPSVVLLASVCGLDRL-RPSPWTPSWV 369
           + + H G V    LP P  P  PSV  + S      +  P PW PSW+
Sbjct: 47  VEVHHGGLVAPSPLPDP-PPPSPSVAAIFSFSSSSLIFPPPPWRPSWL 93


>11_01_0204 -
           1612505-1612636,1612809-1612926,1613050-1613162,
           1613640-1613712,1613797-1613936,1614059-1614129,
           1614262-1614430,1614625-1614690,1615081-1615179,
           1615298-1615471,1615745-1615823,1615929-1616035,
           1616395-1616439
          Length = 461

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 241 HPG*VDLFELPSPWLPEVPSVVLLASVCGLDRLRPS 348
           H G  DL EL   W P++PS+++  +  G + L PS
Sbjct: 417 HQGQKDLKELH--WHPQIPSMIISTAADGFNMLMPS 450


>07_03_1363 - 26022333-26023225,26023319-26023451
          Length = 341

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +1

Query: 322 CGLDRLRPSPWTPSWVLSRVSFCHLHGQ-TWLYAETLIKLLNRC 450
           C  D ++  PWTP   L  VS+   HG   W    T   L+ RC
Sbjct: 7   CDKDGVKKGPWTPEEDLVLVSYVQEHGPGNWRAVPTRTGLM-RC 49


>09_01_0037 - 604001-604957
          Length = 318

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +1

Query: 271 PSPWLPEVPSVVLLASVCGLDRLRPSPWTPS 363
           P P  P   S+ L  S+ GLD   P P TPS
Sbjct: 194 PPPPPPPATSLSLSLSLPGLDHPHPDPSTPS 224


>03_01_0195 -
           1548204-1548257,1548547-1548642,1548726-1548770,
           1549063-1549251,1549512-1549607,1550163-1550216,
           1550566-1550582,1550701-1550797,1551604-1551681,
           1551908-1551976,1552084-1552167,1552282-1552353,
           1552757-1552831,1552915-1552990,1553080-1553141,
           1553231-1553315,1553411-1553475,1554431-1554474,
           1554733-1554988
          Length = 537

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 102 KSIFCKHNNIHIVLNSQTRYKILQLKLR 185
           +++  K +N+ ++ N +T+Y  LQL LR
Sbjct: 144 ETVIDKEDNVFVMSNRKTKYPTLQLDLR 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,631,983
Number of Sequences: 37544
Number of extensions: 193168
Number of successful extensions: 439
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)