Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10e07
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    29   0.39 
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    28   0.90 
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   2.7  
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ...    25   4.8  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    25   4.8  
SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces...    25   6.3  
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    25   6.3  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   6.3  
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    25   8.4  
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    25   8.4  

>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 29.1 bits (62), Expect = 0.39
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 385 CGVFSILSLKFILIYKLNIT*SYLFLESLRIHKLHYC 495
           C  FS+ SLKF +++      S L L    I KL YC
Sbjct: 45  CSKFSMNSLKFCVLFSFKTVYSLLKLIKTLIRKLLYC 81


>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 27.9 bits (59), Expect = 0.90
 Identities = 19/85 (22%), Positives = 36/85 (42%)
 Frame = -2

Query: 354 DPYHQSLFAKLENPDVVYQNFVKRLAKYHFQVKAIIQDILECRESMEKLNELNEKGRAKI 175
           D Y   L   L+  D       ++L+ Y  + + ++  I E   ++E+L   NE+   ++
Sbjct: 351 DFYISKLEKSLDRNDTTPVPSDEKLSNYAAEKENLVSRISELEHTIEQLTINNERDNERM 410

Query: 174 TEVREELENLYLYGKETGDTKYDTE 100
           +    ELE      +   D+  D E
Sbjct: 411 SPAEFELETTQEVEENDSDSHDDEE 435


>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 23/92 (25%), Positives = 41/92 (44%)
 Frame = -2

Query: 354 DPYHQSLFAKLENPDVVYQNFVKRLAKYHFQVKAIIQDILECRESMEKLNELNEKGRAKI 175
           +P   +LF KL N  ++ +   + L K     + +   +L+   S+ KL+ L E    K+
Sbjct: 22  EPLEANLFGKLHNKLLICKAKKENLEK-KLAYQMMYSKLLK---SLPKLSSLEENKLTKL 77

Query: 174 TEVREELENLYLYGKETGDTKYDTELESQRHL 79
               E++EN     +E      +TEL   + L
Sbjct: 78  KAPIEDMENTKKELEEIRKQSTETELRYLKSL 109


>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -2

Query: 177 ITEVREELENLYLYGKETGDTKYDTELESQRHLLAC-LLKEFKDANINSMFAMK 19
           +TE    L+N  +Y  E G   Y   LE +     C +L E  D + +S   +K
Sbjct: 318 LTESNPFLDNYMMYVGEDGAYTYTFNLEKRSDCPVCGVLSEVYDISASSTVTLK 371


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -2

Query: 243 DILECRESMEKLNELNEKGRAKITEVREELENLYLY 136
           + ++  ES  KLN++ EK  + I+++     NL+LY
Sbjct: 280 ETIQSLESHYKLNQVGEKEYSTISDLCFSKGNLFLY 315


>SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -2

Query: 180 KITEVREELENLYLYGKETGDTKYDTELESQRHLLACL-LKEFKDANINSMFA 25
           K T+  EEL+ L LY  E      D+E  + + +L  + L  F   NI+  FA
Sbjct: 130 KNTKDMEELKALILYAMENARLFLDSEQNAAKGVLGLVDLTYFSRKNIDLDFA 182


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = -2

Query: 219 MEKLNELNEKGRAKITEVREELENLYLYGKETGDTKYDTE 100
           MEK+++L  +   ++T   ++L+ +Y+ G +T     +TE
Sbjct: 138 MEKIHDLLSEKNDRLTVHEDKLQGVYVQGLKTIYVSSETE 177


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 351 PYHQSLFAKLENPDVV 304
           PYH+   A L+NPD++
Sbjct: 530 PYHELFCALLKNPDII 545


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 27/108 (25%), Positives = 49/108 (45%)
 Frame = -2

Query: 327 KLENPDVVYQNFVKRLAKYHFQVKAIIQDILECRESMEKLNELNEKGRAKITEVREELEN 148
           KL N ++ + N V++  K   +++ ++Q +L+  E  E+  ++ E+   K        EN
Sbjct: 629 KLVNRNLDF-NKVEKFGKEIEELEPVVQKVLD-EEKQERELKIAERDLKKG-------EN 679

Query: 147 LYLYGKETGDTKYDTELESQRHLLACLLKEFKDANINSMFAMKRHKEK 4
           +  YG E       T  +S++   A    E KD    S+   K+  EK
Sbjct: 680 IMKYGDEIRSRPARTWFQSEKDKQASKASEAKDK--KSLAKRKKQMEK 725


>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +2

Query: 62  LRRQAKRCLCDSNSVSYFVSPVSLPYRYKFSNSSRTSVIFALPXXXXXXXXXIDSLHSRI 241
           L +  K C+   NSV  F + + +P     SN    SV F            I+S HS++
Sbjct: 175 LSKLEKTCVQYMNSVQNFPTDIPVPSNLSISNLDVVSVEF--KRLKRNSIFLINSFHSKV 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,873,385
Number of Sequences: 5004
Number of extensions: 34688
Number of successful extensions: 128
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)