Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10e07
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0975 - 7566280-7566461,7567004-7567132,7567203-7567236,756... 33 0.13
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373... 31 0.39
02_04_0446 - 22995503-22995655,22995775-22995912 31 0.39
01_01_0252 - 2062867-2063048,2063509-2063637,2063702-2063735,206... 30 1.2
02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376... 29 1.6
08_01_0715 + 6318967-6319200,6319710-6320090,6320453-6320497 29 2.1
06_01_0860 - 6514921-6515034,6515125-6515196,6515344-6515400,651... 29 2.7
02_04_0481 + 23284296-23284448,23284553-23284753,23284855-232879... 29 2.7
11_08_0104 + 28378448-28378821,28378974-28380702 28 4.8
08_02_0686 + 20047804-20048262,20049107-20049409 28 4.8
05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733... 28 4.8
11_03_0149 + 10787332-10787454,10787776-10788529,10790406-107904... 27 6.3
10_06_0102 + 10758601-10758948,10759051-10759257,10759349-107595... 27 6.3
05_06_0265 - 26759960-26760088,26760315-26760386,26760457-267605... 27 6.3
08_02_0853 - 21898293-21899564,21899910-21899964,21900079-21901034 27 8.4
06_03_0929 - 26028345-26028390,26028474-26028610,26028695-260288... 27 8.4
05_03_0306 - 12015845-12016039,12016285-12016389,12016504-120165... 27 8.4
04_04_1093 + 30825722-30826168,30826457-30826608,30826926-308270... 27 8.4
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 27 8.4
>06_01_0975 -
7566280-7566461,7567004-7567132,7567203-7567236,
7567347-7567579,7568526-7568587,7568704-7568761,
7568856-7568922,7569016-7569063
Length = 270
Score = 33.1 bits (72), Expect = 0.13
Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Frame = -2
Query: 243 DILECRESME----KLNELNEKGRAKITEVREEL-ENLYLYGKETGDTKYDTELESQRHL 79
DI E R++M+ +L NE+ AK+T+ ++L E L ET TK EL S+
Sbjct: 32 DINELRQAMKDWVAELQSENERLVAKLTQKEQQLVEAQTLLLDETRKTK---ELNSEILK 88
Query: 78 LACLLKEFKDAN 43
L CLL E DAN
Sbjct: 89 LQCLLAEKNDAN 100
>12_02_0953 -
24736642-24736673,24737104-24737188,24737267-24737386,
24737484-24737549,24737629-24737799,24737901-24737999,
24738075-24738186,24738282-24738343,24738412-24738483,
24738583-24738681,24738764-24738997,24739104-24739178,
24739299-24739386,24739478-24739638,24739734-24739841,
24739934-24741922,24742007-24742279,24742957-24743295,
24743449-24745038,24745166-24745241,24745333-24745412,
24745614-24745679,24745761-24745830,24745899-24746134,
24746149-24746319,24746915-24747097,24747176-24747241,
24747326-24747389,24747472-24747530,24747612-24747699,
24747799-24747891,24747956-24748116,24748215-24748307,
24748405-24748518,24748654-24748773,24748852-24748935,
24749016-24749171,24749518-24750154,24752874-24752929
Length = 2815
Score = 31.5 bits (68), Expect = 0.39
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = -2
Query: 270 HFQVKAIIQDILECRESMEKLNELNEKGRAKITEVREELENLYLYGKE 127
+F++K Q++ CR ++ E N+K +I +++ EL N++ +E
Sbjct: 837 NFELKRTSQELETCRGELQACLEANKKLAREIADLQNELSNIHSSNRE 884
>02_04_0446 - 22995503-22995655,22995775-22995912
Length = 96
Score = 31.5 bits (68), Expect = 0.39
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -2
Query: 180 KITEVREELENLYLYGKETGDTK--YDTELE 94
K+ E+R+ NL + GK TGD K YD E E
Sbjct: 46 KLNEIRKTNSNLVIIGKPTGDVKEEYDAEAE 76
>01_01_0252 -
2062867-2063048,2063509-2063637,2063702-2063735,
2063844-2064076,2064306-2064367,2064500-2064557,
2064709-2064775,2064881-2064928
Length = 270
Score = 29.9 bits (64), Expect = 1.2
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Frame = -2
Query: 243 DILECRESMEK----LNELNEKGRAKITEVREELENLY-LYGKETGDTKYDTELESQRHL 79
DI E +++M+ L NE+ AK+T+ ++L + L ET TK EL S+
Sbjct: 32 DIKELQQAMKDWVADLQGENERLIAKLTQKEQQLVEVQTLLLDETRKTK---ELNSEILK 88
Query: 78 LACLLKEFKDAN 43
L CLL E DAN
Sbjct: 89 LQCLLAEKNDAN 100
>02_01_0521 +
3768072-3768239,3768280-3768337,3769197-3769659,
3769736-3769990,3770763-3770934,3772260-3772910,
3773659-3774045,3774123-3774155,3774239-3774307,
3774388-3774463,3775135-3775223,3775442-3775615,
3775693-3775821
Length = 907
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = -2
Query: 309 VVYQNFVKRLAKYHFQVKAIIQDILECRESMEKLNE 202
+ Q++ K L +FQ++A +QD LE + ME++N+
Sbjct: 634 IATQSYQKML---YFQIEAAVQDCLELLKEMERMND 666
>08_01_0715 + 6318967-6319200,6319710-6320090,6320453-6320497
Length = 219
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/75 (22%), Positives = 37/75 (49%)
Frame = -2
Query: 324 LENPDVVYQNFVKRLAKYHFQVKAIIQDILECRESMEKLNELNEKGRAKITEVREELENL 145
L+ P ++ ++ + Q++A ++ R+ +++L E+ AK + EE+ENL
Sbjct: 118 LQQPVAAPKSISPQMQELQAQLEAEKEESAGLRQKVQRLEAQAEESEAKAQKQAEEIENL 177
Query: 144 YLYGKETGDTKYDTE 100
+T + DT+
Sbjct: 178 KKAITDTQKSAADTQ 192
>06_01_0860 -
6514921-6515034,6515125-6515196,6515344-6515400,
6515512-6515650,6515737-6515921,6516043-6516126,
6516552-6516674,6518043-6518219,6518331-6518400,
6518478-6518574,6519022-6519097,6519240-6519329,
6519548-6519655,6520715-6520756,6520854-6521045,
6521239-6521309,6521396-6521550,6521999-6522064,
6522769-6522820,6523476-6523566,6523897-6524094,
6524173-6524267,6524361-6524485,6524586-6525016
Length = 969
Score = 28.7 bits (61), Expect = 2.7
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = -2
Query: 234 ECRESMEKLNELNEKGRAKITEVREELENLYLYGKETGDTKYDTELESQRHLLACLLKEF 55
+C ES E+ + + ++EV +E ++ E+ D +E + L+ C L+EF
Sbjct: 222 DCSESEEEDDHAESEDEGSVSEVEDEGDDDEEKSGESDDDDAIKSVEDLKKLVPCTLEEF 281
>02_04_0481 + 23284296-23284448,23284553-23284753,23284855-23287971,
23288510-23289353,23289468-23290120,23290573-23290676,
23290898-23291000
Length = 1724
Score = 28.7 bits (61), Expect = 2.7
Identities = 24/119 (20%), Positives = 49/119 (41%), Gaps = 2/119 (1%)
Frame = -2
Query: 390 TTMALKMDLSPTDPYHQ--SLFAKLENPDVVYQNFVKRLAKYHFQVKAIIQDILECRESM 217
++++L D DP + + ++ V + L K + QV + + + S+
Sbjct: 925 SSISLPFDSPCEDPIDKIGQIAQYIKESQVTKSSVENELHKVNEQVTSQASQLADALSSL 984
Query: 216 EKLNELNEKGRAKITEVREELENLYLYGKETGDTKYDTELESQRHLLACLLKEFKDANI 40
+ L + + I+ + EE + L+ + ELE LA +F+DAN+
Sbjct: 985 KVLEDELSNSKEYISSISEEKRQMQLH-----TAAVEEELEKTNEELAIYASKFEDANV 1038
>11_08_0104 + 28378448-28378821,28378974-28380702
Length = 700
Score = 27.9 bits (59), Expect = 4.8
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Frame = -2
Query: 318 NPDVVYQNFVKRLAKYH---FQVKAIIQDILECRESMEKLNELNEKGRAKITEVREELEN 148
NP+ Y + + K+H + AI++ ILE M+KL + E+G+ ++ + + ++
Sbjct: 288 NPE--YTDHLIHALKHHPGQIEAAAIMEHILEGSSYMKKLAKDKEQGQGELDRLTKLKQD 345
Query: 147 LYLYGKETGDTKYDTELESQRHLLACLLKEFKDANINSMFAMKRHK 10
Y T ++E R + +E N N + + R K
Sbjct: 346 RYAI--RTAPQWLGPQVEVIRFATKSIEREINSVNDNPVIDVARRK 389
>08_02_0686 + 20047804-20048262,20049107-20049409
Length = 253
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/16 (62%), Positives = 15/16 (93%)
Frame = -2
Query: 195 EKGRAKITEVREELEN 148
++GRA++ EVR+ELEN
Sbjct: 141 DRGRAQVVEVRDELEN 156
>05_05_0348 +
24271764-24271898,24273055-24273144,24273205-24273303,
24273725-24273826,24273912-24274088,24274193-24274398,
24274491-24274575,24274641-24274798,24274873-24274948,
24275117-24275245,24275313-24275457,24275561-24275691,
24276183-24276335,24276447-24276636,24277006-24277139,
24277248-24277406,24277659-24277964,24278040-24278216,
24278446-24278529,24278592-24278822,24278913-24279002,
24279090-24279211,24279293-24279448,24279477-24279635,
24279705-24279765,24280004-24280138,24280384-24280471,
24280548-24280620,24280883-24280994,24281691-24281711
Length = 1327
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/71 (18%), Positives = 32/71 (45%)
Frame = -2
Query: 375 KMDLSPTDPYHQSLFAKLENPDVVYQNFVKRLAKYHFQVKAIIQDILECRESMEKLNELN 196
+ +L+ +S+ +++ D +++ K+H + + EC + E L L
Sbjct: 516 RAELTAAQNQMESIKEQIKAKDTYIMELQEKIEKHHSEANEARKVEQECLKQEESLIPLE 575
Query: 195 EKGRAKITEVR 163
+ R K+ E++
Sbjct: 576 QAARQKVAEIK 586
>11_03_0149 +
10787332-10787454,10787776-10788529,10790406-10790473,
10791254-10791421
Length = 370
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 207 NELNEKGRAKITEVREELENLYLYGKET 124
NEL E G A + ++ E+LEN G+ T
Sbjct: 329 NELLEDGNACLPDISEQLENALALGRPT 356
>10_06_0102 + 10758601-10758948,10759051-10759257,10759349-10759507,
10759617-10759709,10759913-10760008,10760457-10760724,
10760805-10761047,10761298-10761422,10761499-10761615,
10761705-10761779,10761886-10761942,10762035-10762139,
10762244-10762330,10762790-10763047,10763075-10763263,
10763418-10763528,10763640-10763729,10763814-10763990,
10764075-10764152,10764412-10764726,10764819-10765162,
10765304-10765541,10765631-10765998,10766106-10766316,
10766622-10766801,10766886-10769045,10769151-10769207
Length = 2251
Score = 27.5 bits (58), Expect = 6.3
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = -2
Query: 282 LAKYHFQVKAIIQDILECRESME-KLNELNEKGRAKITEVREELENLYLYGKETGDTKYD 106
LA Y + ++QD+L C +S E + E T + ++L N L GK + + +
Sbjct: 800 LAGYEHNINEVVQDLLNCLDSPELPFLQWQELMSVLATRLPKDLRN-ELDGKYK-EYELN 857
Query: 105 TELESQRHLLACLLKEFKDANI 40
++ + A LL+ +AN+
Sbjct: 858 SDFRKNKDFPAKLLRGIIEANL 879
>05_06_0265 -
26759960-26760088,26760315-26760386,26760457-26760546,
26760649-26760693,26760785-26760880,26760980-26761031,
26761209-26761297,26761388-26761504,26761680-26761737,
26761834-26761936,26762027-26762051,26762677-26762826
Length = 341
Score = 27.5 bits (58), Expect = 6.3
Identities = 20/85 (23%), Positives = 34/85 (40%)
Frame = -2
Query: 318 NPDVVYQNFVKRLAKYHFQVKAIIQDILECRESMEKLNELNEKGRAKITEVREELENLYL 139
N ++ +N + R+ + HF+ K D+L+ +E + T E+ N Y
Sbjct: 119 NDGIILRNHITRMLRLHFRGKLYYADLLDLFNEVEFKTASGQLLDLITTHEGEKDLNKYN 178
Query: 138 YGKETGDTKYDTELESQRHLLACLL 64
G +Y T S +AC L
Sbjct: 179 IGVHRRIVQYKTSYYSFYLPVACAL 203
>08_02_0853 - 21898293-21899564,21899910-21899964,21900079-21901034
Length = 760
Score = 27.1 bits (57), Expect = 8.4
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = -2
Query: 234 ECRESMEKLNELNEKGRAKITEVREELENLYLYGKETGDTKYDTE 100
E R+S E NE+N + A E RE EN Y +E D + +TE
Sbjct: 533 EERDSEE--NEINYEEEADQDEEREAEENEINYNEEAEDEESETE 575
>06_03_0929 -
26028345-26028390,26028474-26028610,26028695-26028826,
26028901-26029109,26029554-26029674,26030730-26031080
Length = 331
Score = 27.1 bits (57), Expect = 8.4
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 228 RESMEKLNELNEKGRAKITEVREELENLYLYGKETGDTKYDTELESQRH 82
R E +EL + R K+ ++REE+ GK GDT + Q H
Sbjct: 216 RVRQELKHELKQGYREKLVDIREEILRKRRAGKLPGDTASTLKAWWQAH 264
>05_03_0306 -
12015845-12016039,12016285-12016389,12016504-12016596,
12017240-12017443,12018686-12018697
Length = 202
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = -2
Query: 264 QVKAIIQDILECRESMEKLNELNEKGRAKITEVREELENLYLYGKETGDTKYDTE 100
Q++A ++ R+ +++L E+ AK + EE+ENL +T + DT+
Sbjct: 145 QLEAETEESAGLRQKVQRLEAQAEESEAKAQKQDEEIENLKKAITDTQKSAADTQ 199
>04_04_1093 +
30825722-30826168,30826457-30826608,30826926-30827048,
30827240-30827384,30828032-30828093,30828373-30828586,
30829671-30830585,30830827-30831076,30831164-30831432
Length = 858
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 228 RESMEKLNELNEKGRAKITEVREELEN 148
+ S+EKL+ LNE+ K+T EL+N
Sbjct: 829 KSSLEKLSLLNEENNVKLTLREPELKN 855
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 27.1 bits (57), Expect = 8.4
Identities = 21/83 (25%), Positives = 40/83 (48%)
Frame = -2
Query: 288 KRLAKYHFQVKAIIQDILECRESMEKLNELNEKGRAKITEVREELENLYLYGKETGDTKY 109
KRLA+ H Q K + E +K+ E EK A+ ++L + E+ +
Sbjct: 284 KRLAELHLQEKEAESKNRKLEEREKKIAEREEKVSAREKVGLQKLLEDHNVKLESKRRDF 343
Query: 108 DTELESQRHLLACLLKEFKDANI 40
D +LE+++ +L + K+A++
Sbjct: 344 DLQLENEKKSFDAMLVQ-KEADL 365
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,826,277
Number of Sequences: 37544
Number of extensions: 184235
Number of successful extensions: 477
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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