Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10e07
         (499 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    27   0.47 
Z49815-1|CAA89969.1|  237|Anopheles gambiae serine proteinase pr...    26   0.82 
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    25   1.4  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    25   1.4  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    23   4.4  

>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 26.6 bits (56), Expect = 0.47
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 315 PDVVYQNFVKRLAKYHFQVKAIIQDILECRESMEK 211
           PD VY  + K+L   H Q+ A    +LE    + K
Sbjct: 478 PDFVYNFWYKKLITIHEQIAACFNTVLEDSRKLPK 512


>Z49815-1|CAA89969.1|  237|Anopheles gambiae serine proteinase
           protein.
          Length = 237

 Score = 25.8 bits (54), Expect = 0.82
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 307 GLSEFREEIG*VSFSSQSNYPGYPGM 230
           G S FRE +G VS+      P YPG+
Sbjct: 186 GDSNFRELVGIVSWGEGCARPNYPGV 211


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 286 EIG*VSFSSQSNYPGYPGMQGVDG 215
           E G  S   Q+  PG PG++G DG
Sbjct: 306 EPGAASEKGQNGEPGVPGLRGNDG 329



 Score = 23.0 bits (47), Expect = 5.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 256 SNYPGYPGMQGVDG 215
           + +PG PG  GVDG
Sbjct: 169 AGHPGAPGRPGVDG 182


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 243 DILECRES-MEKLNELNEKGRAKITEVREELENLYLYGK 130
           +I +CR   +E   ++N   RAK +E RE+L  LY+  +
Sbjct: 277 EIAQCRSHCIEARRKMN---RAKSSEQREDLRRLYILAR 312


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 250 YPGYPGMQGVDGE 212
           YPG PG +G+ GE
Sbjct: 484 YPGQPGPEGLRGE 496



 Score = 23.0 bits (47), Expect = 5.8
 Identities = 11/42 (26%), Positives = 16/42 (38%)
 Frame = -1

Query: 292 REEIG*VSFSSQSNYPGYPGMQGVDGEIXXXXXXXXXKNNGS 167
           R ++G      +   PG PG +G DG            + GS
Sbjct: 328 RGQVGERGHKGEKGLPGQPGPRGRDGNFGPVGLPGQKGDRGS 369



 Score = 22.6 bits (46), Expect = 7.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 247 PGYPGMQGVDG 215
           PGYPG+ G +G
Sbjct: 156 PGYPGIPGTNG 166



 Score = 22.6 bits (46), Expect = 7.6
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 250 YPGYPGMQGVDG 215
           YPG PG  GV G
Sbjct: 158 YPGIPGTNGVPG 169



 Score = 22.6 bits (46), Expect = 7.6
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 307 GLSEFREEIG*VSFSSQSNYPGYPGMQGVDGE 212
           GL   + E+G   F  +    G PG  GV GE
Sbjct: 238 GLPGPQGEVGPRGFPGRPGEKGVPGTPGVRGE 269


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 454,457
Number of Sequences: 2352
Number of extensions: 8484
Number of successful extensions: 43
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 44400195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)