Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10e07
(499 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr... 36 0.012
AF016677-7|AAB66144.1| 292|Caenorhabditis elegans Hypothetical ... 33 0.15
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p... 32 0.20
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr... 32 0.20
J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy ch... 32 0.20
U80452-5|AAB37859.1| 180|Caenorhabditis elegans Hypothetical pr... 32 0.27
AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans hom... 31 0.35
AC025723-7|AAN84833.1| 619|Caenorhabditis elegans C.elegans hom... 31 0.35
AC025723-6|AAN84834.1| 621|Caenorhabditis elegans C.elegans hom... 31 0.35
AF000261-3|AAB52924.1| 464|Caenorhabditis elegans Hypothetical ... 31 0.46
AF016670-9|AAB66107.2| 701|Caenorhabditis elegans Hypothetical ... 29 2.5
Z81130-5|CAB03420.1| 361|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 28 3.3
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 28 3.3
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p... 28 4.3
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p... 28 4.3
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p... 28 4.3
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p... 28 4.3
AF099922-5|AAK21406.1| 401|Caenorhabditis elegans Hypothetical ... 28 4.3
AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trn... 28 4.3
AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trn... 28 4.3
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 27 5.7
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 27 5.7
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 27 5.7
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 27 5.7
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 27 5.7
U13019-7|AAC24445.2| 689|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z70683-2|CAA94592.2| 717|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr... 27 10.0
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch... 27 10.0
AC084155-3|AAY86295.1| 129|Caenorhabditis elegans Hypothetical ... 27 10.0
AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical ... 27 10.0
>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical protein
F58G4.1 protein.
Length = 1974
Score = 36.3 bits (80), Expect = 0.012
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Frame = -2
Query: 282 LAKYHFQVKAIIQDILECRESMEKLNELNEKGRAKITEVREELENLYLYGKETGD-TKYD 106
+AK Q+K ++ I E E ++ K E++ ELE L E G T+
Sbjct: 1111 VAKLQRQIKELLARIQELEEELDAERNSRSKAEKARNEMQMELEELGDRLDEAGGATQAQ 1170
Query: 105 TELESQRHL-LACLLKEFKDANINSMFAMKRHKEK 4
EL +R LA L ++ +DA INS +M ++K
Sbjct: 1171 IELNKKREAELAKLRQDLEDAAINSETSMAALRKK 1205
>AF016677-7|AAB66144.1| 292|Caenorhabditis elegans Hypothetical
protein ZK1240.8 protein.
Length = 292
Score = 32.7 bits (71), Expect = 0.15
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = -2
Query: 249 IQDILECRESMEKLNELNEKGRAKITEVREELENLYLYGKETGDTKY 109
I+D+LECR KLN E ++ E RE + N L+ ++ + KY
Sbjct: 138 IRDVLECRLKQMKLNA--ESFTVQLEEFREAMSNRQLFIEKLSEIKY 182
>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
protein F11C3.3 protein.
Length = 1963
Score = 32.3 bits (70), Expect = 0.20
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Frame = -2
Query: 339 SLFAKLENPDVVYQNFVKRLAKYHFQVKAIIQDILECRESM-EKLNELNEKGRAKITEVR 163
SLF LE+ + +RLAK Q K + + E + + + + + RAK ++
Sbjct: 895 SLFTNLESTKTQLSDAEERLAKLEAQQKDASKQLSELNDQLADNEDRTADVQRAK-KKIE 953
Query: 162 EELENL--YLYGKETGDTKYDTELESQRHLLACLLKEF--KDANINSMFAMKRHKEKI 1
E+E L + E K ++E +S+ H + L E +D I + K+H+E+I
Sbjct: 954 AEVEALKKQIQDLEMSLRKAESEKQSKDHQIRSLQDEMQQQDEAIAKLNKEKKHQEEI 1011
Score = 29.1 bits (62), Expect = 1.9
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = -2
Query: 282 LAKYHFQVKAIIQDILECRESMEKLNELNEKGRAKITEVREELENL-YLYGKETGDTKYD 106
++K Q+K I E E +E + K ++++ ELE L ++ G T
Sbjct: 1110 VSKLQRQIKDGQSRISELEEELENERQSRSKADRAKSDLQRELEELGEKLDEQGGATAAQ 1169
Query: 105 TELESQRHL-LACLLKEFKDANIN 37
E+ +R LA L ++ ++AN+N
Sbjct: 1170 VEVNKKREAELAKLRRDLEEANMN 1193
>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical protein
F11C3.3 protein.
Length = 1963
Score = 32.3 bits (70), Expect = 0.20
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Frame = -2
Query: 339 SLFAKLENPDVVYQNFVKRLAKYHFQVKAIIQDILECRESM-EKLNELNEKGRAKITEVR 163
SLF LE+ + +RLAK Q K + + E + + + + + RAK ++
Sbjct: 895 SLFTNLESTKTQLSDAEERLAKLEAQQKDASKQLSELNDQLADNEDRTADVQRAK-KKIE 953
Query: 162 EELENL--YLYGKETGDTKYDTELESQRHLLACLLKEF--KDANINSMFAMKRHKEKI 1
E+E L + E K ++E +S+ H + L E +D I + K+H+E+I
Sbjct: 954 AEVEALKKQIQDLEMSLRKAESEKQSKDHQIRSLQDEMQQQDEAIAKLNKEKKHQEEI 1011
Score = 29.1 bits (62), Expect = 1.9
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = -2
Query: 282 LAKYHFQVKAIIQDILECRESMEKLNELNEKGRAKITEVREELENL-YLYGKETGDTKYD 106
++K Q+K I E E +E + K ++++ ELE L ++ G T
Sbjct: 1110 VSKLQRQIKDGQSRISELEEELENERQSRSKADRAKSDLQRELEELGEKLDEQGGATAAQ 1169
Query: 105 TELESQRHL-LACLLKEFKDANIN 37
E+ +R LA L ++ ++AN+N
Sbjct: 1170 VEVNKKREAELAKLRRDLEEANMN 1193
>J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy chain
protein.
Length = 1966
Score = 32.3 bits (70), Expect = 0.20
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Frame = -2
Query: 339 SLFAKLENPDVVYQNFVKRLAKYHFQVKAIIQDILECRESM-EKLNELNEKGRAKITEVR 163
SLF LE+ + +RLAK Q K + + E + + + + + RAK ++
Sbjct: 898 SLFTNLESTKTQLSDAEERLAKLEAQQKDASKQLSELNDQLADNEDRTADVQRAK-KKIE 956
Query: 162 EELENL--YLYGKETGDTKYDTELESQRHLLACLLKEF--KDANINSMFAMKRHKEKI 1
E+E L + E K ++E +S+ H + L E +D I + K+H+E+I
Sbjct: 957 AEVEALKKQIQDLEMSLRKAESEKQSKDHQIRSLQDEMQQQDEAIAKLNKEKKHQEEI 1014
Score = 29.1 bits (62), Expect = 1.9
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = -2
Query: 282 LAKYHFQVKAIIQDILECRESMEKLNELNEKGRAKITEVREELENL-YLYGKETGDTKYD 106
++K Q+K I E E +E + K ++++ ELE L ++ G T
Sbjct: 1113 VSKLQRQIKDGQSRISELEEELENERQSRSKADRAKSDLQRELEELGEKLDEQGGATAAQ 1172
Query: 105 TELESQRHL-LACLLKEFKDANIN 37
E+ +R LA L ++ ++AN+N
Sbjct: 1173 VEVNKKREAELAKLRRDLEEANMN 1196
>U80452-5|AAB37859.1| 180|Caenorhabditis elegans Hypothetical
protein C16C8.5 protein.
Length = 180
Score = 31.9 bits (69), Expect = 0.27
Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = -2
Query: 261 VKAIIQDILECRESMEK-LNELNEKGRAKITEVREELENLYLYGKETGD 118
VK++ ++LE ++S++K L ++ E + + +++EELENL G D
Sbjct: 35 VKSLCAELLEEQKSLKKRLQKVEENQKIENAKIKEELENLKNGGNRVAD 83
>AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans
homeobox protein 44,isoform a protein.
Length = 1273
Score = 31.5 bits (68), Expect = 0.35
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Frame = -2
Query: 330 AKLENP-DVVYQNFVKRLAKYHFQ-VKAIIQDILECRESMEKLNELNEKGRAKITEVREE 157
AKLE+ D+ +N V + K Q + + +++ +E M++ NE+ EK + ++
Sbjct: 154 AKLESEQDIFIENAVNEVEKKAEQELNDRLTELIAEKEKMKEQNEILEKNMDSLESKNKD 213
Query: 156 LENLYLYGKETGDTKYDTELESQRHLLACLLKEFKDANINSMFAMKR 16
++ K+T + K E E L+ +K+ DA +F +R
Sbjct: 214 IQRKLEIAKQTVEQKDGLENEQ----LSIAMKDLADAKHKIVFLEER 256
>AC025723-7|AAN84833.1| 619|Caenorhabditis elegans C.elegans
homeobox protein 44,isoform b protein.
Length = 619
Score = 31.5 bits (68), Expect = 0.35
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Frame = -2
Query: 330 AKLENP-DVVYQNFVKRLAKYHFQ-VKAIIQDILECRESMEKLNELNEKGRAKITEVREE 157
AKLE+ D+ +N V + K Q + + +++ +E M++ NE+ EK + ++
Sbjct: 154 AKLESEQDIFIENAVNEVEKKAEQELNDRLTELIAEKEKMKEQNEILEKNMDSLESKNKD 213
Query: 156 LENLYLYGKETGDTKYDTELESQRHLLACLLKEFKDANINSMFAMKR 16
++ K+T + K E E L+ +K+ DA +F +R
Sbjct: 214 IQRKLEIAKQTVEQKDGLENEQ----LSIAMKDLADAKHKIVFLEER 256
>AC025723-6|AAN84834.1| 621|Caenorhabditis elegans C.elegans
homeobox protein 44,isoform c protein.
Length = 621
Score = 31.5 bits (68), Expect = 0.35
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Frame = -2
Query: 330 AKLENP-DVVYQNFVKRLAKYHFQ-VKAIIQDILECRESMEKLNELNEKGRAKITEVREE 157
AKLE+ D+ +N V + K Q + + +++ +E M++ NE+ EK + ++
Sbjct: 154 AKLESEQDIFIENAVNEVEKKAEQELNDRLTELIAEKEKMKEQNEILEKNMDSLESKNKD 213
Query: 156 LENLYLYGKETGDTKYDTELESQRHLLACLLKEFKDANINSMFAMKR 16
++ K+T + K E E L+ +K+ DA +F +R
Sbjct: 214 IQRKLEIAKQTVEQKDGLENEQ----LSIAMKDLADAKHKIVFLEER 256
>AF000261-3|AAB52924.1| 464|Caenorhabditis elegans Hypothetical
protein F19B10.4 protein.
Length = 464
Score = 31.1 bits (67), Expect = 0.46
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = -2
Query: 312 DVVYQNFVKRLAKYHFQVKAIIQDILECRESMEKLNELNEKGR-AKITEVREELENL 145
D + NF K +Y + + + + + E R+++E+ N N+ K+ E+REEL+NL
Sbjct: 253 DEMKMNFKKFTREYEKEKRELEKQMDEQRQTLEQDNARNQSEYDMKMREMREELQNL 309
>AF016670-9|AAB66107.2| 701|Caenorhabditis elegans Hypothetical
protein K02F6.9 protein.
Length = 701
Score = 28.7 bits (61), Expect = 2.5
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Frame = -2
Query: 327 KLENPDVVYQNFVKRLAKYH--FQVKAIIQDILECRESM-EKLNELNEK-GRAKITEVRE 160
K+EN V+ + FVK A+Y F ++ LE RE + KLN ++ K G + TE +
Sbjct: 384 KIENLKVIEEMFVKIKAEYEQIFTENEYLE--LEIREFLIRKLNAIDGKFGLDQYTEGKP 441
Query: 159 ELENLY 142
LE +Y
Sbjct: 442 LLEKMY 447
>Z81130-5|CAB03420.1| 361|Caenorhabditis elegans Hypothetical
protein T23G11.7a protein.
Length = 361
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Frame = -2
Query: 252 IIQDILECRESMEKLNELNEK---GRAKITEVREEL 154
I Q + C + EK+ ++N+K G+ K++EV EEL
Sbjct: 95 IEQKNVSCEKLREKIAKINQKILIGKGKLSEVNEEL 130
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical
protein K04H4.1b protein.
Length = 1502
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 286 EIG*VSFSSQSNYPGYPGMQGVDGE 212
E G F PGYPG QG +GE
Sbjct: 881 ECGEDGFPGSPGQPGYPGQQGREGE 905
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 286 EIG*VSFSSQSNYPGYPGMQGVDGE 212
E G F PGYPG QG +GE
Sbjct: 1138 ECGEDGFPGSPGQPGYPGQQGREGE 1162
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -1
Query: 247 PGYPGMQGVDGEI 209
PGYPGM+G GEI
Sbjct: 599 PGYPGMKGEAGEI 611
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 286 EIG*VSFSSQSNYPGYPGMQGVDGE 212
E G F PGYPG QG +GE
Sbjct: 1137 ECGEDGFPGSPGQPGYPGQQGREGE 1161
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -1
Query: 247 PGYPGMQGVDGEI 209
PGYPGM+G GEI
Sbjct: 598 PGYPGMKGEAGEI 610
>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
protein F35D11.11a protein.
Length = 1840
Score = 27.9 bits (59), Expect = 4.3
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = -2
Query: 270 HFQVKAIIQDILE-CRESMEKLNELNEKGRAKITEVREELENLYLYGKETGDTKYDTELE 94
H + ++ + E R+ +EKLNE N+ RA+ + R L E+ + TEL+
Sbjct: 844 HLHTEEEVERLKEKMRKELEKLNEQNDGDRAEWSNERNRL--------ESSKNEAVTELQ 895
Query: 93 SQRHLLACLLKEFKDANI 40
+ L ++KE +D I
Sbjct: 896 ERVQKLEDVVKEKEDKEI 913
>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
protein F35D11.11c protein.
Length = 1898
Score = 27.9 bits (59), Expect = 4.3
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = -2
Query: 270 HFQVKAIIQDILE-CRESMEKLNELNEKGRAKITEVREELENLYLYGKETGDTKYDTELE 94
H + ++ + E R+ +EKLNE N+ RA+ + R L E+ + TEL+
Sbjct: 844 HLHTEEEVERLKEKMRKELEKLNEQNDGDRAEWSNERNRL--------ESSKNEAVTELQ 895
Query: 93 SQRHLLACLLKEFKDANI 40
+ L ++KE +D I
Sbjct: 896 ERVQKLEDVVKEKEDKEI 913
>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
protein F35D11.11d protein.
Length = 1671
Score = 27.9 bits (59), Expect = 4.3
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = -2
Query: 270 HFQVKAIIQDILE-CRESMEKLNELNEKGRAKITEVREELENLYLYGKETGDTKYDTELE 94
H + ++ + E R+ +EKLNE N+ RA+ + R L E+ + TEL+
Sbjct: 604 HLHTEEEVERLKEKMRKELEKLNEQNDGDRAEWSNERNRL--------ESSKNEAVTELQ 655
Query: 93 SQRHLLACLLKEFKDANI 40
+ L ++KE +D I
Sbjct: 656 ERVQKLEDVVKEKEDKEI 673
>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
protein F35D11.11b protein.
Length = 1911
Score = 27.9 bits (59), Expect = 4.3
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = -2
Query: 270 HFQVKAIIQDILE-CRESMEKLNELNEKGRAKITEVREELENLYLYGKETGDTKYDTELE 94
H + ++ + E R+ +EKLNE N+ RA+ + R L E+ + TEL+
Sbjct: 844 HLHTEEEVERLKEKMRKELEKLNEQNDGDRAEWSNERNRL--------ESSKNEAVTELQ 895
Query: 93 SQRHLLACLLKEFKDANI 40
+ L ++KE +D I
Sbjct: 896 ERVQKLEDVVKEKEDKEI 913
>AF099922-5|AAK21406.1| 401|Caenorhabditis elegans Hypothetical
protein F56F11.2 protein.
Length = 401
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -2
Query: 354 DPYHQSLFAKLENPD--VVYQNFVKRLAKYHFQVKAIIQDI 238
DP ++ FAKL +P +VY KR +YH V+ +QDI
Sbjct: 183 DPVNRC-FAKLMSPRTMLVYTEERKRWVEYHIPVEQSLQDI 222
>AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform a protein.
Length = 909
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = -2
Query: 219 MEKLNELNEKGRAKITEVREELENLYLYGKETGDTKYDTEL--ESQRHLLACLLKE 58
++ L ++E IT V++ + N Y Y E G +DT+ ++ +H A L+ E
Sbjct: 391 VDVLTRVSEYVPEVITYVKKIISNGYAYAAEDGSVYFDTKAFEQNPKHFYAKLVPE 446
>AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform b protein.
Length = 908
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = -2
Query: 219 MEKLNELNEKGRAKITEVREELENLYLYGKETGDTKYDTEL--ESQRHLLACLLKE 58
++ L ++E IT V++ + N Y Y E G +DT+ ++ +H A L+ E
Sbjct: 390 VDVLTRVSEYVPEVITYVKKIISNGYAYAAEDGSVYFDTKAFEQNPKHFYAKLVPE 445
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 307 GLSEFREEIG*VSFSSQSNYPGYPGMQGVDG 215
G+ + E+G Q +PG PG++G G
Sbjct: 1350 GIPGLKGEVGGAGLPGQPGFPGIPGLKGEGG 1380
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 268 FSSQSNYPGYPGMQGVDG 215
F Q PG PGM+G DG
Sbjct: 897 FPGQDGLPGVPGMKGEDG 914
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 307 GLSEFREEIG*VSFSSQSNYPGYPGMQGVDG 215
G+ + E+G Q +PG PG++G G
Sbjct: 1349 GIPGLKGEVGGAGLPGQPGFPGIPGLKGEGG 1379
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 268 FSSQSNYPGYPGMQGVDG 215
F Q PG PGM+G DG
Sbjct: 896 FPGQDGLPGVPGMKGEDG 913
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 307 GLSEFREEIG*VSFSSQSNYPGYPGMQGVDG 215
G+ + E+G Q +PG PG++G G
Sbjct: 1349 GIPGLKGEVGGAGLPGQPGFPGIPGLKGEGG 1379
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 268 FSSQSNYPGYPGMQGVDG 215
F Q PG PGM+G DG
Sbjct: 896 FPGQDGLPGVPGMKGEDG 913
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 307 GLSEFREEIG*VSFSSQSNYPGYPGMQGVDG 215
G+ + E+G Q +PG PG++G G
Sbjct: 1350 GIPGLKGEVGGAGLPGQPGFPGIPGLKGEGG 1380
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 268 FSSQSNYPGYPGMQGVDG 215
F Q PG PGM+G DG
Sbjct: 897 FPGQDGLPGVPGMKGEDG 914
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) collagen
protein.
Length = 1795
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 307 GLSEFREEIG*VSFSSQSNYPGYPGMQGVDG 215
G+ + E+G Q +PG PG++G G
Sbjct: 1386 GIPGLKGEVGGAGLPGQPGFPGIPGLKGEGG 1416
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 268 FSSQSNYPGYPGMQGVDG 215
F Q PG PGM+G DG
Sbjct: 933 FPGQDGLPGVPGMKGEDG 950
>U13019-7|AAC24445.2| 689|Caenorhabditis elegans Hypothetical
protein T12A2.6 protein.
Length = 689
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/49 (22%), Positives = 24/49 (48%)
Frame = -2
Query: 402 YRKYTTMALKMDLSPTDPYHQSLFAKLENPDVVYQNFVKRLAKYHFQVK 256
Y + L S + P++ + ++L PD+VYQ ++ +++K
Sbjct: 67 YEALKELYLTGGFSKSLPFNSIILSQLSIPDIVYQQLIRAFELTRWEIK 115
>Z70683-2|CAA94592.2| 717|Caenorhabditis elegans Hypothetical
protein F13B12.3 protein.
Length = 717
Score = 27.1 bits (57), Expect = 7.6
Identities = 22/92 (23%), Positives = 41/92 (44%)
Frame = -2
Query: 300 QNFVKRLAKYHFQVKAIIQDILECRESMEKLNELNEKGRAKITEVREELENLYLYGKETG 121
+NF KY Q + RE + KLNE+ ++ + IT + +E + G
Sbjct: 18 RNFSIEDDKYWIQPSRCTSVDMSSREIINKLNEMEQEEKLFIT--YDVIERNPKFA-TVG 74
Query: 120 DTKYDTELESQRHLLACLLKEFKDANINSMFA 25
+ ++ + + +L C L + KD N+ + A
Sbjct: 75 GSIFEFINNTMQPILKCHLSQVKDTNMLHLIA 106
>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
K12F2.1 protein.
Length = 1969
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = -2
Query: 243 DILECRESMEKLNELNEKGRAKITEVREELENLYLYGKETGDTKYDTELE 94
++ + E EKLN+L +K++++ +LE++ ++ K T+ E
Sbjct: 910 NLADAEERNEKLNQLKATLESKLSDITGQLEDMQERNEDLARQKKKTDQE 959
>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
protein.
Length = 1969
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = -2
Query: 243 DILECRESMEKLNELNEKGRAKITEVREELENLYLYGKETGDTKYDTELE 94
++ + E EKLN+L +K++++ +LE++ ++ K T+ E
Sbjct: 910 NLADAEERNEKLNQLKATLESKLSDITGQLEDMQERNEDLARQKKKTDQE 959
>AC084155-3|AAY86295.1| 129|Caenorhabditis elegans Hypothetical
protein Y45G5AM.4 protein.
Length = 129
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = -2
Query: 264 QVKAIIQDILE-CRESMEKLNELNEKGRAK 178
++K +D+ + CR S +KL++L EKGR++
Sbjct: 74 RLKVSKEDVQKGCRASYDKLHKLAEKGRSR 103
>AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical
protein C07H6.3 protein.
Length = 1378
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 315 PDVVYQNFVKRLAKYHFQVKAIIQDILECRESMEKLNELNE 193
P Y+ LAK H A I++ L+ EK ++LNE
Sbjct: 1126 PPPDYRTSTAHLAKNHVDQAAYIRNQLDAIRDFEKADKLNE 1166
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,011,513
Number of Sequences: 27780
Number of extensions: 186676
Number of successful extensions: 1169
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -