Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10e06
(793 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha... 205 6e-54
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar... 163 2e-41
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo... 90 4e-19
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce... 28 1.8
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 28 1.8
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s... 27 2.3
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 26 5.4
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz... 26 7.1
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 7.1
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 25 9.4
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 25 9.4
>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 321
Score = 205 bits (500), Expect = 6e-54
Identities = 97/171 (56%), Positives = 130/171 (76%), Gaps = 1/171 (0%)
Frame = -2
Query: 792 EPAITKWIKENIPEWKS-SVMVSPDAGGVKRMTGIADRLDIDFAIIHKERQRANEGDSTV 616
EP++ ++I+ENI + +V+VSPDAGG KR T +ADRLD+DFA+IHKERQ+ANE V
Sbjct: 150 EPSVLRYIRENIDTTVNPTVIVSPDAGGAKRATALADRLDLDFALIHKERQKANEVSRMV 209
Query: 615 LVGDVKNKTAIMVDDLADTCDTILKGAEALREAGANKIYAFLTHGIFAGNAIEKINNSSL 436
LVGDV++K AI+VDD+ADTC T+ A+ L++ GA +YA +THGI +G AI+ IN S+L
Sbjct: 210 LVGDVRDKLAILVDDMADTCGTLGLAAKTLKDNGAKAVYAIVTHGILSGKAIKVINESAL 269
Query: 435 EAIVVTNTIPQEKNMKLCPKLQTIDISVMLAEAIRRTHYAESVSYLFTNVP 283
E ++VTNTIP + LC K++TIDIS +LAE IRR H+ ESVS LF+ P
Sbjct: 270 EKVIVTNTIPHDDKRSLCSKIETIDISGVLAECIRRIHHGESVSVLFSVAP 320
>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 341
Score = 163 bits (397), Expect = 2e-41
Identities = 81/165 (49%), Positives = 113/165 (68%)
Frame = -2
Query: 789 PAITKWIKENIPEWKSSVMVSPDAGGVKRMTGIADRLDIDFAIIHKERQRANEGDSTVLV 610
P + +I NIP + ++V+VSPDAGG KR T IAD L +DFA+IHK R R G S +LV
Sbjct: 173 PLLKHYISLNIPNYHNAVIVSPDAGGAKRATAIADALGLDFALIHKNR-RHEYGTSLMLV 231
Query: 609 GDVKNKTAIMVDDLADTCDTILKGAEALREAGANKIYAFLTHGIFAGNAIEKINNSSLEA 430
GDV+NK AI++DDL DT T+++ AE ++E GA+KIYA +TH + +G+AIE++ S ++
Sbjct: 232 GDVQNKVAILIDDLIDTAYTLVRAAEFVKEHGASKIYALVTHCVLSGDAIERVKLSCIDK 291
Query: 429 IVVTNTIPQEKNMKLCPKLQTIDISVMLAEAIRRTHYAESVSYLF 295
++VTNT PQ C ID++ AEAIRR H ES+S L+
Sbjct: 292 LIVTNTAPQTITPSGC--FDIIDVAPTFAEAIRRIHNGESISILY 334
>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
Prs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 89.8 bits (213), Expect = 4e-19
Identities = 49/110 (44%), Positives = 67/110 (60%), Gaps = 3/110 (2%)
Frame = -2
Query: 615 LVGDVKNKTAIMVDDLADTCDTILKGAEAL-REAGANKIYAFLTHGIFAGNAIEKINNSS 439
LVGDV KTA+++DD + + +E L + GA ++ THGIF ++ + +
Sbjct: 296 LVGDVNGKTALLIDDTIENPTAFIVASEHLVKRCGAKRVIVIGTHGIFQNKCLKDLQSCE 355
Query: 438 -LEAIVVTNTIPQEKNMKL-CPKLQTIDISVMLAEAIRRTHYAESVSYLF 295
+E IVVTNT P + L C KL IDIS +LAEAIRRTH ES+S+LF
Sbjct: 356 YIEQIVVTNTYPIKPQAVLECDKLTVIDISGVLAEAIRRTHNGESISFLF 405
Score = 66.1 bits (154), Expect = 5e-12
Identities = 25/53 (47%), Positives = 42/53 (79%)
Frame = -2
Query: 792 EPAITKWIKENIPEWKSSVMVSPDAGGVKRMTGIADRLDIDFAIIHKERQRAN 634
EP I +WI+ N+ +W+ +V+VS + GG KR+T +AD L++DFA+I+ +RQR++
Sbjct: 148 EPNIAEWIRRNVDDWEEAVVVSKNPGGAKRVTSLADTLNLDFALINTDRQRSS 200
>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 715
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 448 QFVLGSNRGDK-HHTARKKYEIVSEVTNNRHFCD 350
Q++ N G +H+ KK + S TNN H CD
Sbjct: 280 QYMPADNFGSNDNHSHNKKRRLSSLSTNNNHLCD 313
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.9 bits (59), Expect = 1.8
Identities = 20/93 (21%), Positives = 44/93 (47%)
Frame = -2
Query: 663 IIHKERQRANEGDSTVLVGDVKNKTAIMVDDLADTCDTILKGAEALREAGANKIYAFLTH 484
II E +N+ + D KN+ M+DD + ++++ E++ + +K + L
Sbjct: 1420 IISLEESLSNQRQKESSLLDAKNELEHMLDDTSRKNSSLMEKIESINSSLDDKSFE-LAS 1478
Query: 483 GIFAGNAIEKINNSSLEAIVVTNTIPQEKNMKL 385
+ A++K+++ SL + + QE K+
Sbjct: 1479 AVEKLGALQKLHSESLSLMENIKSQLQEAKEKI 1511
>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 792 EPAITKWIKENIPEWKSSVMVSPDAGGVKRMTGIADRL 679
E IT W KE I + K S++ PD+ K + +AD++
Sbjct: 337 EQTIT-WAKEYIKKAKDSLLCLPDSPARKALFALADKV 373
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 384 TISYFFLAVWCLSPRLLPRTNC 449
T+SY V CLS R +PR C
Sbjct: 187 TLSYVIPIVQCLSHRTVPRLRC 208
>SPCC794.08 |||HEAT repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 798
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = -2
Query: 459 EKINNSSLEAIVVTNTIPQEKNMKLCPKLQTIDISVMLAEAIRRTHYAESVSYL 298
EK+ N+S E +++ + + ++ PK+ D ++ AE R Y + + L
Sbjct: 636 EKLTNASTEEVMLPLDMVVNELLEKSPKVFPEDSRLLFAEQSRHPKYTDIIQKL 689
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 25.8 bits (54), Expect = 7.1
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -2
Query: 579 VDDLADTCDTILKGAEALREAGANKIYAFLTHGIFAGNAI--EKINNSSLEAI 427
+DDL D TIL + + G +Y F + + I E+I+N +L+++
Sbjct: 575 MDDLGDNYYTILMSSNPVSSYGVGSLYLFQPKIVCSEKYINHEEIDNMNLKSL 627
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +1
Query: 499 VNLIGAGFAERFSTFEYCVTCIS*IVNHDCSFILHI 606
+++ + E + T + +TC+ IV+HD SF+ H+
Sbjct: 593 LDVANIAWLEAYLTSQKNITCL--IVSHDSSFLDHV 626
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 25.4 bits (53), Expect = 9.4
Identities = 7/24 (29%), Positives = 16/24 (66%)
Frame = -2
Query: 423 VTNTIPQEKNMKLCPKLQTIDISV 352
++ +P+EK +C + QT+ +S+
Sbjct: 652 ISEVLPEEKRKAICDESQTVRVSI 675
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,368,918
Number of Sequences: 5004
Number of extensions: 72101
Number of successful extensions: 187
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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