Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10e06
(793 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0763 - 24405525-24405701,24406209-24406368,24406924-244070... 109 2e-24
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 80 2e-15
01_06_0553 + 30173964-30174349,30175124-30175439,30175523-301756... 48 9e-06
02_05_0511 + 29644266-29644399,29644502-29644913,29645007-296450... 39 0.005
05_04_0403 + 20997191-20998816 29 3.2
01_06_1510 - 37859664-37861319 29 4.2
12_02_0962 + 24854731-24854830,24854966-24855076,24855332-248554... 28 9.8
12_01_0815 + 7495939-7496961 28 9.8
08_02_1271 - 25762750-25764276 28 9.8
06_01_0327 + 2377121-2377812,2377911-2378265 28 9.8
06_01_0322 - 2335577-2335931,2336030-2336991 28 9.8
>06_03_0763 -
24405525-24405701,24406209-24406368,24406924-24407005,
24407098-24407167,24407443-24407607,24407731-24407874,
24408467-24408715,24409006-24409221,24409306-24409398
Length = 451
Score = 109 bits (263), Expect = 2e-24
Identities = 59/143 (41%), Positives = 84/143 (58%), Gaps = 1/143 (0%)
Frame = -2
Query: 747 KSSVMVSPDAGGVKRMTGIADRL-DIDFAIIHKERQRANEGDSTVLVGDVKNKTAIMVDD 571
K V+VSPD GGV R A +L D AI+ K RQ N + L+GDVK K AIMVDD
Sbjct: 248 KDLVVVSPDVGGVVRARAFAKKLSDAPLAIVDKRRQGHNMSEVMHLIGDVKGKVAIMVDD 307
Query: 570 LADTCDTILKGAEALREAGANKIYAFLTHGIFAGNAIEKINNSSLEAIVVTNTIPQEKNM 391
+ DT TI A L++ GA +YA TH +F+ AIE+++ E ++VTN+I ++
Sbjct: 308 MIDTAGTITSAAALLKQEGAEAVYACSTHAVFSPPAIERLSGGIFEEVIVTNSILLPEH- 366
Query: 390 KLCPKLQTIDISVMLAEAIRRTH 322
K P+L + ++ ++AE I H
Sbjct: 367 KCFPQLTVLSMANLVAETIWHVH 389
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 80.2 bits (189), Expect = 2e-15
Identities = 44/121 (36%), Positives = 71/121 (58%), Gaps = 16/121 (13%)
Frame = -2
Query: 615 LVGDVKNKTAIMVDDLADTCD----------------TILKGAEALREAGANKIYAFLTH 484
L+GDV+ K A+M+DD+ DT D TI KGAE L + GA ++YA TH
Sbjct: 202 LIGDVRGKVAVMMDDMIDTADISLPNINILMKPIKLGTIAKGAELLHQEGAREVYACCTH 261
Query: 483 GIFAGNAIEKINNSSLEAIVVTNTIPQEKNMKLCPKLQTIDISVMLAEAIRRTHYAESVS 304
+F+ AIE++++ + +++TNTIP +++ K P+L + ++ +L E I R H SV
Sbjct: 262 AVFSPPAIERLSSGLFQEVIITNTIPLKED-KSFPQLTILSVANLLGETIWRVHDDCSVG 320
Query: 303 Y 301
+
Sbjct: 321 H 321
>01_06_0553 +
30173964-30174349,30175124-30175439,30175523-30175618,
30175710-30175778,30175878-30176006,30176165-30176264,
30177321-30177454
Length = 409
Score = 48.0 bits (109), Expect = 9e-06
Identities = 28/104 (26%), Positives = 52/104 (50%)
Frame = -2
Query: 765 ENIPEWKSSVMVSPDAGGVKRMTGIADRLDIDFAIIHKERQRANEGDSTVLVGDVKNKTA 586
+ +P+ + + PD G KR + + +K R+ + + GD + +
Sbjct: 259 QELPDSDNITIAFPDDGAWKRFYKQLQHFPM--VVCNKVRE-GEQRIVRIKEGDPRGRHV 315
Query: 585 IMVDDLADTCDTILKGAEALREAGANKIYAFLTHGIFAGNAIEK 454
++VDDL + T+++ + L E GA K+ A++THGIF + EK
Sbjct: 316 VIVDDLVQSGGTLIECQKVLAEHGAAKVSAYVTHGIFPNKSWEK 359
>02_05_0511 +
29644266-29644399,29644502-29644913,29645007-29645075,
29645169-29645333,29645771-29645870,29645906-29646081
Length = 351
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Frame = -2
Query: 642 RANEGDSTVL---VGDVKNKTAIMVDDLADTCDTILKGAEALREAGANKIYAFLTHGIFA 472
+ EGD ++ G+ + + ++VDDL + T+ + + L GA K+ A++TH +F
Sbjct: 222 KVREGDKRIVRIKEGNPEGRHVVIVDDLVQSGGTLRECQKVLAAHGAAKVSAYVTHAVFP 281
Query: 471 GNAIEKINNSS 439
+ E+ +++
Sbjct: 282 KQSYERFTHTN 292
>05_04_0403 + 20997191-20998816
Length = 541
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/70 (25%), Positives = 35/70 (50%)
Frame = -2
Query: 609 GDVKNKTAIMVDDLADTCDTILKGAEALREAGANKIYAFLTHGIFAGNAIEKINNSSLEA 430
G ++ K+ ++VDD T K LR+AGA +++ + G+ + I+ S E
Sbjct: 419 GVIRGKSVVVVDDSLVRGTTSSKIVRLLRDAGAREVHMRIASPPVVGSCLYGIDTPS-EG 477
Query: 429 IVVTNTIPQE 400
+++N + E
Sbjct: 478 ELISNRMDLE 487
>01_06_1510 - 37859664-37861319
Length = 551
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/70 (25%), Positives = 35/70 (50%)
Frame = -2
Query: 609 GDVKNKTAIMVDDLADTCDTILKGAEALREAGANKIYAFLTHGIFAGNAIEKINNSSLEA 430
G ++ K+ ++VDD T K LR+AGA +++ + G+ + I+ S E
Sbjct: 425 GVIRGKSVVVVDDSLVRGTTSSKIVRLLRDAGAREVHMRIASPPVIGSCLYGIDTPS-EG 483
Query: 429 IVVTNTIPQE 400
+++N + E
Sbjct: 484 ELISNRMDLE 493
>12_02_0962 +
24854731-24854830,24854966-24855076,24855332-24855424,
24855538-24855687,24855934-24855992,24856081-24856134
Length = 188
Score = 27.9 bits (59), Expect = 9.8
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = -2
Query: 612 VGDVK-NKTAIMVDDLADTCDTILKGAEALREAGANKIYAFLTHGIFAGNAIEKINNSSL 436
+G V+ N AI+VDDL T T+ + L AGA + + EK+ +
Sbjct: 122 IGAVEPNDRAIIVDDLIATGGTLCAAVKLLERAGAEVVECACVVELQELKGREKLGKIPV 181
Query: 435 EAIVVTN 415
+V TN
Sbjct: 182 FVLVETN 188
>12_01_0815 + 7495939-7496961
Length = 340
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -1
Query: 208 IFTIDGDHGTSCRT*AYRTTIINNLKTKF*KKNDYL 101
I TI GD CR R I+ N+ TKF + +DYL
Sbjct: 201 ITTIQGD--ARCRRCDARKVIVYNIATKFQEVSDYL 234
>08_02_1271 - 25762750-25764276
Length = 508
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 338 ASASITEMSIVCNFGHNFIFFSC 406
A+AS T+M + GHNF+ SC
Sbjct: 78 AAASGTKMKVATRLGHNFMKLSC 100
>06_01_0327 + 2377121-2377812,2377911-2378265
Length = 348
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 368 VCNFGHNFIFFSCGMVFVTTIASKDELLI 454
V FGH + + G ++V T AS DE++I
Sbjct: 27 VRGFGHRTVGGAAGKIYVVTDASDDEMVI 55
>06_01_0322 - 2335577-2335931,2336030-2336991
Length = 438
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 368 VCNFGHNFIFFSCGMVFVTTIASKDELLI 454
V FGH + + G ++V T AS DE++I
Sbjct: 117 VRGFGHRTVGGAAGKIYVVTDASDDEMVI 145
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,127,970
Number of Sequences: 37544
Number of extensions: 438185
Number of successful extensions: 913
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -