Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10e06
         (793 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            24   6.2  

>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 23.8 bits (49), Expect = 6.2
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +2

Query: 347 SITEMSIVCNFGHNFIFFSCGMVFVTTIASKDELLIFSIAFPANI 481
           S+    ++  FG+ F+  S   + V T+  K+E    S   P NI
Sbjct: 833 SLPPKFLIHTFGNGFLMCSASSIDVWTMGIKNEWQKGSTQAPTNI 877



 Score = 23.4 bits (48), Expect = 8.2
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = -2

Query: 501  YAFLTHGIFAGNAIEKINNSSLEAIVVTNTIPQEKNM 391
            + + +HG     A+  +   S   IV TN +P+  ++
Sbjct: 1975 FTYSSHGKVMREALVNLTRESCYQIVKTNEVPESTDL 2011


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 840,538
Number of Sequences: 2352
Number of extensions: 17545
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 83160600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)