Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10e06
(793 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00036-8|AAL06052.1| 318|Caenorhabditis elegans Hypothetical pr... 240 9e-64
U00036-7|AAK29858.2| 319|Caenorhabditis elegans Hypothetical pr... 240 9e-64
U00036-6|AAK29853.1| 377|Caenorhabditis elegans Hypothetical pr... 240 9e-64
U00036-5|AAT92064.1| 446|Caenorhabditis elegans Hypothetical pr... 240 9e-64
Z68014-5|CAA92027.1| 353|Caenorhabditis elegans Hypothetical pr... 100 1e-21
AL132877-11|CAB60853.1| 214|Caenorhabditis elegans Hypothetical... 34 0.13
U58753-8|AAC24439.1| 633|Caenorhabditis elegans Hypothetical pr... 30 1.7
U00043-6|AAC77507.1| 487|Caenorhabditis elegans Hypothetical pr... 29 5.0
U61947-7|AAB03137.1| 735|Caenorhabditis elegans Hypothetical pr... 28 6.7
>U00036-8|AAL06052.1| 318|Caenorhabditis elegans Hypothetical
protein R151.2c protein.
Length = 318
Score = 240 bits (587), Expect = 9e-64
Identities = 111/170 (65%), Positives = 140/170 (82%)
Frame = -2
Query: 792 EPAITKWIKENIPEWKSSVMVSPDAGGVKRMTGIADRLDIDFAIIHKERQRANEGDSTVL 613
EPAI K+IKE+IP W++SV+VSPDAGG KR+T IADRL++DFA+IHKE +RANE + L
Sbjct: 147 EPAILKYIKESIPNWQTSVIVSPDAGGAKRVTSIADRLNVDFALIHKESKRANEVEKMTL 206
Query: 612 VGDVKNKTAIMVDDLADTCDTILKGAEALREAGANKIYAFLTHGIFAGNAIEKINNSSLE 433
VG V+ K AI+VDD+ADTC TI A+ L EAGA+K+YAF HGIF+G A+ ++N S E
Sbjct: 207 VGSVEGKVAILVDDMADTCGTICMAADKLVEAGADKVYAFCVHGIFSGPALTRLNASKFE 266
Query: 432 AIVVTNTIPQEKNMKLCPKLQTIDISVMLAEAIRRTHYAESVSYLFTNVP 283
A+VVTNTIPQ++NMK C K+Q IDIS++LAEAIRRTH ESVSYLF++VP
Sbjct: 267 AVVVTNTIPQDENMKKCSKIQCIDISMILAEAIRRTHNGESVSYLFSHVP 316
>U00036-7|AAK29858.2| 319|Caenorhabditis elegans Hypothetical
protein R151.2b protein.
Length = 319
Score = 240 bits (587), Expect = 9e-64
Identities = 111/170 (65%), Positives = 140/170 (82%)
Frame = -2
Query: 792 EPAITKWIKENIPEWKSSVMVSPDAGGVKRMTGIADRLDIDFAIIHKERQRANEGDSTVL 613
EPAI K+IKE+IP W++SV+VSPDAGG KR+T IADRL++DFA+IHKE +RANE + L
Sbjct: 148 EPAILKYIKESIPNWQTSVIVSPDAGGAKRVTSIADRLNVDFALIHKESKRANEVEKMTL 207
Query: 612 VGDVKNKTAIMVDDLADTCDTILKGAEALREAGANKIYAFLTHGIFAGNAIEKINNSSLE 433
VG V+ K AI+VDD+ADTC TI A+ L EAGA+K+YAF HGIF+G A+ ++N S E
Sbjct: 208 VGSVEGKVAILVDDMADTCGTICMAADKLVEAGADKVYAFCVHGIFSGPALTRLNASKFE 267
Query: 432 AIVVTNTIPQEKNMKLCPKLQTIDISVMLAEAIRRTHYAESVSYLFTNVP 283
A+VVTNTIPQ++NMK C K+Q IDIS++LAEAIRRTH ESVSYLF++VP
Sbjct: 268 AVVVTNTIPQDENMKKCSKIQCIDISMILAEAIRRTHNGESVSYLFSHVP 317
>U00036-6|AAK29853.1| 377|Caenorhabditis elegans Hypothetical
protein R151.2a protein.
Length = 377
Score = 240 bits (587), Expect = 9e-64
Identities = 111/170 (65%), Positives = 140/170 (82%)
Frame = -2
Query: 792 EPAITKWIKENIPEWKSSVMVSPDAGGVKRMTGIADRLDIDFAIIHKERQRANEGDSTVL 613
EPAI K+IKE+IP W++SV+VSPDAGG KR+T IADRL++DFA+IHKE +RANE + L
Sbjct: 206 EPAILKYIKESIPNWQTSVIVSPDAGGAKRVTSIADRLNVDFALIHKESKRANEVEKMTL 265
Query: 612 VGDVKNKTAIMVDDLADTCDTILKGAEALREAGANKIYAFLTHGIFAGNAIEKINNSSLE 433
VG V+ K AI+VDD+ADTC TI A+ L EAGA+K+YAF HGIF+G A+ ++N S E
Sbjct: 266 VGSVEGKVAILVDDMADTCGTICMAADKLVEAGADKVYAFCVHGIFSGPALTRLNASKFE 325
Query: 432 AIVVTNTIPQEKNMKLCPKLQTIDISVMLAEAIRRTHYAESVSYLFTNVP 283
A+VVTNTIPQ++NMK C K+Q IDIS++LAEAIRRTH ESVSYLF++VP
Sbjct: 326 AVVVTNTIPQDENMKKCSKIQCIDISMILAEAIRRTHNGESVSYLFSHVP 375
>U00036-5|AAT92064.1| 446|Caenorhabditis elegans Hypothetical
protein R151.2d protein.
Length = 446
Score = 240 bits (587), Expect = 9e-64
Identities = 111/170 (65%), Positives = 140/170 (82%)
Frame = -2
Query: 792 EPAITKWIKENIPEWKSSVMVSPDAGGVKRMTGIADRLDIDFAIIHKERQRANEGDSTVL 613
EPAI K+IKE+IP W++SV+VSPDAGG KR+T IADRL++DFA+IHKE +RANE + L
Sbjct: 275 EPAILKYIKESIPNWQTSVIVSPDAGGAKRVTSIADRLNVDFALIHKESKRANEVEKMTL 334
Query: 612 VGDVKNKTAIMVDDLADTCDTILKGAEALREAGANKIYAFLTHGIFAGNAIEKINNSSLE 433
VG V+ K AI+VDD+ADTC TI A+ L EAGA+K+YAF HGIF+G A+ ++N S E
Sbjct: 335 VGSVEGKVAILVDDMADTCGTICMAADKLVEAGADKVYAFCVHGIFSGPALTRLNASKFE 394
Query: 432 AIVVTNTIPQEKNMKLCPKLQTIDISVMLAEAIRRTHYAESVSYLFTNVP 283
A+VVTNTIPQ++NMK C K+Q IDIS++LAEAIRRTH ESVSYLF++VP
Sbjct: 395 AVVVTNTIPQDENMKKCSKIQCIDISMILAEAIRRTHNGESVSYLFSHVP 444
>Z68014-5|CAA92027.1| 353|Caenorhabditis elegans Hypothetical
protein W04G3.5 protein.
Length = 353
Score = 100 bits (240), Expect = 1e-21
Identities = 46/120 (38%), Positives = 72/120 (60%)
Frame = -2
Query: 645 QRANEGDSTVLVGDVKNKTAIMVDDLADTCDTILKGAEALREAGANKIYAFLTHGIFAGN 466
Q + + +VGDV + AIMVDD+ D + + AE L+ GA KIY THG+ + +
Sbjct: 230 QESKQKPPLTVVGDVGGRIAIMVDDIIDDAQSFVAAAEVLKARGAYKIYVIATHGVLSSD 289
Query: 465 AIEKINNSSLEAIVVTNTIPQEKNMKLCPKLQTIDISVMLAEAIRRTHYAESVSYLFTNV 286
A + S + ++VTNT+P + C K++T+D+S+M+ EAIRR + ES+ LF +V
Sbjct: 290 APALLEASPITEVIVTNTVPHDLQKMRCHKIKTVDVSLMICEAIRRIFHNESMGQLFRDV 349
>AL132877-11|CAB60853.1| 214|Caenorhabditis elegans Hypothetical
protein Y105E8B.5 protein.
Length = 214
Score = 33.9 bits (74), Expect = 0.13
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Frame = -2
Query: 681 LDIDFAIIHKERQRANEGDSTVL----VGDVKNKTAIMVDDLADTCDTILKGAEALREAG 514
+ +DF + + + G ++ + ++K K+ ++VDD++DT T+ K L E G
Sbjct: 90 MTVDFIRVKSYEDQMSTGQIQIMGLSNLDELKGKSVLVVDDISDTGRTLAKLLSTLHETG 149
Query: 513 ANKIYAFL 490
K + L
Sbjct: 150 VEKTWTAL 157
>U58753-8|AAC24439.1| 633|Caenorhabditis elegans Hypothetical
protein W03B1.9 protein.
Length = 633
Score = 30.3 bits (65), Expect = 1.7
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = -2
Query: 552 TILKGAEALREAGANKIYAFLTHGIFAGNAIEKINNSSLEAIVVTNTIPQEKNMKLCPKL 373
TI+ E + AGAN ++ F A ++ ++ N + VVTN +E +KLCP +
Sbjct: 43 TIVFDEEDVVMAGANFVHTF------ANSSFDRANENK----VVTNAEAKEAVLKLCPAV 92
Query: 372 QTIDISVMLA--EAIR 331
+ + I L+ EA+R
Sbjct: 93 KKLIIQTKLSDFEAVR 108
>U00043-6|AAC77507.1| 487|Caenorhabditis elegans Hypothetical
protein T26A5.4 protein.
Length = 487
Score = 28.7 bits (61), Expect = 5.0
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1
Query: 433 FQGRIVNFFDSVPGKYSVG*ERVNLIG 513
F +++ FFDS+PG+ + R+ ++G
Sbjct: 41 FDVKLIGFFDSIPGEQIMNHPRIKIVG 67
>U61947-7|AAB03137.1| 735|Caenorhabditis elegans Hypothetical
protein C06G3.9 protein.
Length = 735
Score = 28.3 bits (60), Expect = 6.7
Identities = 27/104 (25%), Positives = 43/104 (41%)
Frame = -2
Query: 720 AGGVKRMTGIADRLDIDFAIIHKERQRANEGDSTVLVGDVKNKTAIMVDDLADTCDTILK 541
AGG +T IA L+IDF I K + D + + + V L + T+L
Sbjct: 72 AGGRASLTDIAVALNIDFDHIEKTSRLIVSTDDEFTISNAEIFATEYVHRLRNELRTLLD 131
Query: 540 GAEALREAGANKIYAFLTHGIFAGNAIEKINNSSLEAIVVTNTI 409
A K + L+ + IEK+ +S + +V +TI
Sbjct: 132 EQGNQTTAALCKHWN-LSSELLQSLLIEKLGSSDFQGVVDGDTI 174
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,576,821
Number of Sequences: 27780
Number of extensions: 404036
Number of successful extensions: 989
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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