Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10e06
         (793 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    24   1.9  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   5.7  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   5.7  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   5.7  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   5.7  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   5.7  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    21   9.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   9.9  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 89  EYDMQIIIFFLEFSFQVIDD 148
           +YDM   ++F E SF+V+ D
Sbjct: 427 DYDMSDRLYFEEISFEVVMD 446


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 364 RHFCDARGSHKAYSLCRIRVVSFY*RAIL 278
           RH+ DA+ S + YSL + ++   + +A L
Sbjct: 575 RHYLDAKSSVQNYSLAKHQLKEAFVKAHL 603


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -1

Query: 463 YRKN*QFVLGSNRGDKHHTARKKYEIVSEVTNNRHF 356
           YRK  +     +R  K     K+++I+S ++NN ++
Sbjct: 56  YRKYRETSKERSRDRKEREKSKEHKIISSLSNNYNY 91


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -1

Query: 463 YRKN*QFVLGSNRGDKHHTARKKYEIVSEVTNNRHF 356
           YRK  +     +R  K     K+++I+S ++NN ++
Sbjct: 56  YRKYRETSKERSRDRKEREKSKEHKIISSLSNNYNY 91


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -1

Query: 463 YRKN*QFVLGSNRGDKHHTARKKYEIVSEVTNNRHF 356
           YRK  +     +R  K     K+++I+S ++NN ++
Sbjct: 56  YRKYRETSKERSRDRKEREKSKEHKIISSLSNNYNY 91


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 16/73 (21%), Positives = 30/73 (41%)
 Frame = +2

Query: 569 KSSTMIAVLFFTSPTRTVESPSLALCLSLWIMAKSISRRSAIPVILFTPPASGDTMTLLF 748
           +S  ++    +  P   + SP+  L + +W      S  S    IL T  A G T  +  
Sbjct: 261 RSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNS----ILKTVVAYGGTSVMHQ 316

Query: 749 HSGIFSLIHLVIA 787
              + +  H+++A
Sbjct: 317 RGKLSAGCHILVA 329


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -1

Query: 427 RGDKHHTARKKYEIVSEVTNNRHFCDARGSHKAYSLC 317
           RG + +T  +  E+  E   NR+    R    A++LC
Sbjct: 10  RGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALC 46


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -1

Query: 427 RGDKHHTARKKYEIVSEVTNNRHFCDARGSHKAYSLC 317
           RG + +T  +  E+  E   NR+    R    A++LC
Sbjct: 272 RGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALC 308


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,732
Number of Sequences: 438
Number of extensions: 5106
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)