Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10e05
(468 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_A6C4N0 Cluster: Putative uncharacterized protein; n=1; ... 33 2.4
UniRef50_A5UXU7 Cluster: Ferredoxin-like protein; n=3; Chlorofle... 33 2.4
UniRef50_Q4SL02 Cluster: Chromosome 17 SCAF14563, whole genome s... 32 5.4
UniRef50_Q1M9M2 Cluster: Putative uncharacterized protein; n=1; ... 32 7.2
UniRef50_Q5UZW1 Cluster: Putative uncharacterized protein; n=2; ... 32 7.2
UniRef50_UPI000056385B Cluster: hypothetical protein GLP_165_131... 31 9.5
UniRef50_UPI0000498EB7 Cluster: Nucleotide-binding protein; n=2;... 31 9.5
UniRef50_Q0G7E6 Cluster: Putative uncharacterized protein; n=1; ... 31 9.5
UniRef50_Q2QLI8 Cluster: D-mannose binding lectin family protein... 31 9.5
UniRef50_Q7R477 Cluster: GLP_480_102900_103265; n=1; Giardia lam... 31 9.5
UniRef50_Q234P6 Cluster: Putative uncharacterized protein; n=1; ... 31 9.5
UniRef50_A2FY74 Cluster: Putative uncharacterized protein; n=1; ... 31 9.5
>UniRef50_A6C4N0 Cluster: Putative uncharacterized protein; n=1;
Planctomyces maris DSM 8797|Rep: Putative
uncharacterized protein - Planctomyces maris DSM 8797
Length = 231
Score = 33.5 bits (73), Expect = 2.4
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -1
Query: 429 NKLQTVMSAIRGGCSGCPSPCNSTRNCTPCCSGGSLVTVYSQV 301
++ Q +M CS C PCN+ +C PC +GG T+ V
Sbjct: 55 HRAQRMMKHCCNPCSSC-DPCNTCNSCDPCGAGGFGSTIPGMV 96
>UniRef50_A5UXU7 Cluster: Ferredoxin-like protein; n=3;
Chloroflexaceae|Rep: Ferredoxin-like protein -
Roseiflexus sp. RS-1
Length = 114
Score = 33.5 bits (73), Expect = 2.4
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Frame = -1
Query: 456 KMCDRMDAINKLQTVMSAIRGGCSGCPSPCNSTRNCTPC---CSGGSLVTVY 310
+ CD L +++ + G +PC R TPC CSGG + VY
Sbjct: 19 RFCDPQGQAIHLYALLARLLGPLGRYENPCRVKRGTTPCLGVCSGGPIAVVY 70
>UniRef50_Q4SL02 Cluster: Chromosome 17 SCAF14563, whole genome
shotgun sequence; n=4; Clupeocephala|Rep: Chromosome 17
SCAF14563, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 608
Score = 32.3 bits (70), Expect = 5.4
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 313 NCDQRSSAAARSTISGGVTGRWASAATASNCGHNS 417
N D S++++ST SG ++GR + + +CGH+S
Sbjct: 178 NSDSGRSSSSKSTGSGSLSGRGQPLSDSGSCGHSS 212
>UniRef50_Q1M9M2 Cluster: Putative uncharacterized protein; n=1;
Rhizobium leguminosarum bv. viciae 3841|Rep: Putative
uncharacterized protein - Rhizobium leguminosarum bv.
viciae (strain 3841)
Length = 164
Score = 31.9 bits (69), Expect = 7.2
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +2
Query: 347 VQFLVELQGDGHP--LQPPRIADITVCN 424
VQ++VELQ GHP L P I ++ CN
Sbjct: 120 VQYVVELQAGGHPDILAEPNILELNACN 147
>UniRef50_Q5UZW1 Cluster: Putative uncharacterized protein; n=2;
Halobacteriaceae|Rep: Putative uncharacterized protein -
Haloarcula marismortui (Halobacterium marismortui)
Length = 307
Score = 31.9 bits (69), Expect = 7.2
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = -3
Query: 316 SLQSSSTYPMIFQTP*DAVLAIGQPP---RPIAAFDKATIAIGHHGRNIKT 173
S++ ST IFQ P V+ +G PP +P+ A T+A GRN+ T
Sbjct: 246 SVEVESTNTAIFQRPRRVVVTVGLPPDAEQPLLADQIDTVADDAAGRNVAT 296
>UniRef50_UPI000056385B Cluster: hypothetical protein
GLP_165_131079_126373; n=1; Giardia lamblia ATCC
50803|Rep: hypothetical protein GLP_165_131079_126373 -
Giardia lamblia ATCC 50803
Length = 1568
Score = 31.5 bits (68), Expect = 9.5
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = +1
Query: 292 DMCYLTVNCD--QRSSAAARSTISGG---VTGRWASAATASNCGHNSL*FINSI 438
D+ ++T+ CD R A S++ V W S AT S G N L F NS+
Sbjct: 1385 DVMHMTIRCDGEDREFAPVPSSVLANKAMVPRHWVSCATDSGSGCNDLLFFNSL 1438
>UniRef50_UPI0000498EB7 Cluster: Nucleotide-binding protein; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: Nucleotide-binding
protein - Entamoeba histolytica HM-1:IMSS
Length = 333
Score = 31.5 bits (68), Expect = 9.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 405 AIRGGCSGCPSPCNSTRNCTPCCSGGS 325
+++G C+ P+P N + NC C S GS
Sbjct: 11 SLKGNCNQLPNPSNCSHNCDGCPSKGS 37
>UniRef50_Q0G7E6 Cluster: Putative uncharacterized protein; n=1;
Fulvimarina pelagi HTCC2506|Rep: Putative
uncharacterized protein - Fulvimarina pelagi HTCC2506
Length = 328
Score = 31.5 bits (68), Expect = 9.5
Identities = 21/76 (27%), Positives = 40/76 (52%)
Frame = +3
Query: 69 IHKIILLLPLTQNIFLGHYNINNII*FLVFDLSQ*VLIFRP**PIAIVALSKAAIGRGGW 248
+++++L L L +L + + ++ DL Q VL+F P P+ + + +IG GW
Sbjct: 200 LYQLVLSLALVA-AYLAVFALASLAVSAPLDLRQ-VLLFVP--PVLLTMVLPISIG--GW 253
Query: 249 PIANTASYGVWKIIGY 296
+ TA+ +W + GY
Sbjct: 254 GLRETAAAALWPLAGY 269
>UniRef50_Q2QLI8 Cluster: D-mannose binding lectin family protein,
expressed; n=3; Oryza sativa|Rep: D-mannose binding
lectin family protein, expressed - Oryza sativa subsp.
japonica (Rice)
Length = 898
Score = 31.5 bits (68), Expect = 9.5
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = -1
Query: 423 LQTVMSAIRGGCSGCPSPCNSTRNCTPCCSGGS 325
L TV +A GGC P PC S CTP +G S
Sbjct: 298 LPTVWAAPTGGCD-LPLPCRSLGLCTPGTNGSS 329
>UniRef50_Q7R477 Cluster: GLP_480_102900_103265; n=1; Giardia
lamblia ATCC 50803|Rep: GLP_480_102900_103265 - Giardia
lamblia ATCC 50803
Length = 121
Score = 31.5 bits (68), Expect = 9.5
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -1
Query: 396 GGCSGCPSPCNSTRNCTPCCSGG 328
G C CP PC R C CCSGG
Sbjct: 88 GVCVCCPCPCYC-RRCGRCCSGG 109
>UniRef50_Q234P6 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 1308
Score = 31.5 bits (68), Expect = 9.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 390 CSGCPSPCNSTRNCTPCCSGGSLVTV 313
C S C+ST NCT C SG L+T+
Sbjct: 345 CDNNCSTCDSTNNCTSCNSGYFLLTI 370
>UniRef50_A2FY74 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 165
Score = 31.5 bits (68), Expect = 9.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 429 NKLQTVMSAIRGGCSGCPSPCNSTRNCTPCCS 334
+KL+ V+++ G CS C+S C+ CCS
Sbjct: 55 SKLKKVLTSCSGSCSCSSCSCSSCSCCSSCCS 86
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 466,606,813
Number of Sequences: 1657284
Number of extensions: 8832315
Number of successful extensions: 25281
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 23842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25219
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 25610991215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -