Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10e04
         (457 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   1.0  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   1.4  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   1.4  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   1.4  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    23   1.8  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    22   3.1  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   4.1  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   4.1  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    21   4.1  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   5.5  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   5.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   5.5  
Z69742-1|CAA93624.1|   72|Tribolium castaneum arylphorin protein.      20   9.5  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    20   9.5  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    20   9.5  

>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 193 RDQLDRSNPFYRPGDRTGQT*AP 261
           R+   R NP+YRP  RT +T  P
Sbjct: 223 REDQTRRNPYYRP--RTSRTEPP 243


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 283 RNCCLGCQGPMSGPCG 236
           +  C GC+ P +G CG
Sbjct: 98  KKSCQGCEMPSAGLCG 113


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 283 RNCCLGCQGPMSGPCG 236
           +  C GC+ P +G CG
Sbjct: 46  KKSCQGCEMPSAGLCG 61


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 283 RNCCLGCQGPMSGPCG 236
           +  C GC+ P +G CG
Sbjct: 229 KKSCQGCEMPSAGLCG 244


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 348 NCPSFRI*NQFEVNRRNWTC 289
           N P+F   N FEV R  W C
Sbjct: 31  NFPNFY--NDFEVQRYTWKC 48


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 408 FNQTFFYFIFLLYLSCC 358
           FN  F Y I L+   CC
Sbjct: 237 FNSLFGYQIILVIFDCC 253


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +2

Query: 32  PWTTARSAEPSSAASDTAVP---TAVVRAGYSS-TVAVHISAPPT 154
           PW  +    PS +++ +++P   T+     YSS +V    S+ PT
Sbjct: 66  PWKKSPQGAPSPSSTPSSLPTQRTSTSNPTYSSRSVMTSCSSVPT 110


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = -1

Query: 169 YCSNSCWRC 143
           +C+N+ WRC
Sbjct: 155 HCNNTTWRC 163


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -2

Query: 354 YRNCPSFRI*NQFEVNRRNWTCLYVIAVWVV 262
           Y N   F + +Q     + WT L ++  W V
Sbjct: 26  YYNFEKFSLEHQLWQKIQAWTYLILLTTWTV 56


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 394 KCLIEFCNVLVCF 432
           KCL  FC  LV F
Sbjct: 63  KCLAFFCTALVIF 75


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 394 KCLIEFCNVLVCF 432
           KCL  FC  LV F
Sbjct: 296 KCLAFFCTALVIF 308


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 394 KCLIEFCNVLVCF 432
           KCL  FC  LV F
Sbjct: 296 KCLAFFCTALVIF 308


>Z69742-1|CAA93624.1|   72|Tribolium castaneum arylphorin protein.
          Length = 72

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -2

Query: 276 AVWVVRGLCLARAVPWPIEWIAAVKLVPV 190
           ++W VRG C  +   W  E +    +V V
Sbjct: 3   SLWKVRGRCEGKDSKWRGEHMVGTIVVVV 31


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +1

Query: 88  AHSCSTSRLLLHGSRAYLRTANTSLNNKHLSRARNRDQLDRSNP 219
           A  C   +L LH   A+   A  S  ++HL +   R      NP
Sbjct: 307 ADVCQKYKLWLHVDAAWGGGALVSAKHRHLLKGIERADSVTWNP 350


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 454 LHTSKIYQNTPTRYKIQSNIF 392
           L TSKIY+    +YK   +++
Sbjct: 211 LLTSKIYKVLEEKYKTSGSLY 231


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,883
Number of Sequences: 336
Number of extensions: 2440
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10406187
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)