Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10e04
(457 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1176 + 10112257-10113126 32 0.25
03_02_0294 + 7176906-7177532 28 3.1
02_05_0207 + 26778403-26778927 28 3.1
08_02_0899 + 22401302-22401694 28 4.1
03_04_0174 - 18044516-18046327 28 4.1
06_03_0395 - 20354713-20355570 27 5.4
02_04_0216 + 20986231-20988021 27 5.4
01_06_1229 + 35551522-35552169 27 5.4
01_06_1217 + 35485182-35485949 27 5.4
01_06_0799 - 32072656-32072841,32072846-32072950,32073726-320738... 27 5.4
10_08_0019 - 14167952-14171059 27 7.2
07_01_0622 - 4625246-4627759 27 7.2
01_05_0252 - 19959347-19959541,19960307-19960402,19961028-199611... 27 7.2
12_02_0693 - 22207582-22207620,22208421-22208597,22209258-222093... 27 9.5
01_01_0234 - 1961884-1962627 27 9.5
>06_01_1176 + 10112257-10113126
Length = 289
Score = 31.9 bits (69), Expect = 0.25
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Frame = +2
Query: 5 SFALHYLCAPWTTARS-----AEPSSAASDTAVPTAVVRAG 112
SFA H + P+ ARS A ++AA+D A PTAV+ AG
Sbjct: 219 SFAAHSISPPFAAARSSDGPAAAAAAAAADWAPPTAVLDAG 259
>03_02_0294 + 7176906-7177532
Length = 208
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +2
Query: 170 STSRVHATGTNLTAAIHSIGQGTARARHRPLTTQT 274
+TS V A GTN TAA + R R PL+T T
Sbjct: 29 ATSAVVARGTNATAAAANATVMARRGRSSPLSTAT 63
>02_05_0207 + 26778403-26778927
Length = 174
Score = 28.3 bits (60), Expect = 3.1
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +2
Query: 8 FALHYLCAPWTTARSAEPSSAASDTAVPTAVV--RAGYSSTVAV 133
F+LH + A + S P++A D+++P+AVV R G S++ +
Sbjct: 9 FSLHVVLAGLPPSMSLAPAAARHDSSLPSAVVVARVGPLSSIVL 52
>08_02_0899 + 22401302-22401694
Length = 130
Score = 27.9 bits (59), Expect = 4.1
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = -1
Query: 304 PQLDMPVRNCCLGCQGPMSGPCGPLAYRMDCCGQVGPCCVHARGAYC 164
P D+ V L G +G P +Y CC GPC V G C
Sbjct: 14 PVGDLQVAKLALLVAG--NGFISPSSYLRRCCDDDGPCFVDGAGERC 58
>03_04_0174 - 18044516-18046327
Length = 603
Score = 27.9 bits (59), Expect = 4.1
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +2
Query: 29 APWTTARSAEPSSAASDTAVPTAVVRAGYSSTVAVHISAPPTRV*TISTSRVHAT 193
+PWT + A ++ + A A SS+ + S PPTR+ + S T
Sbjct: 275 SPWTPFGHVAANGAILESFLEAAAAGAAASSSSSSSSSTPPTRLHILDLSNTFCT 329
>06_03_0395 - 20354713-20355570
Length = 285
Score = 27.5 bits (58), Expect = 5.4
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = -1
Query: 307 SPQLDMPVRNCCLGCQGP---MSGPCGPLAYRMDCC 209
+P L+ P CC C+GP ++ G + + CC
Sbjct: 132 APPLEAPANGCCRRCRGPSTAVATATGAPSTSLPCC 167
>02_04_0216 + 20986231-20988021
Length = 596
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 23 LCAPWTTARSAEPSSAASDTAVPTAVVRA 109
L PW A +A P+SAA+ +AV V A
Sbjct: 5 LTPPWPAAAAAAPASAAAASAVTVEAVLA 33
>01_06_1229 + 35551522-35552169
Length = 215
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 196 PCCVHARGAYCSNSCWRCGDMHGYRGGVAGSY 101
PCCV + SC+ ++HG G GSY
Sbjct: 186 PCCVFVQET--DPSCYSVCNVHGEESGAQGSY 215
>01_06_1217 + 35485182-35485949
Length = 255
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 32 PWTTARSAEPSSAASDTAVPTAVVRAGYS 118
PW R + PSSAA+ + TA+ A S
Sbjct: 4 PWVKTRPSSPSSAAASPSPSTALAAAAAS 32
>01_06_0799 -
32072656-32072841,32072846-32072950,32073726-32073839,
32073935-32073996,32074709-32074745,32075091-32075179,
32075331-32075604
Length = 288
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 50 SAEPSSAASDTAVPTAVVRAGYSSTVAVHISAPP 151
++EP++AA+ A A YSS+ SAPP
Sbjct: 28 ASEPAAAAAAVAASDAAAATDYSSSAGDPSSAPP 61
>10_08_0019 - 14167952-14171059
Length = 1035
Score = 27.1 bits (57), Expect = 7.2
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 270 WVVRGLCLA-RAVPWPIEWIAAVKLVPV 190
W G C+ AV WPI W AVK +PV
Sbjct: 991 WGQWGACVGIAAVSWPIGW--AVKCIPV 1016
>07_01_0622 - 4625246-4627759
Length = 837
Score = 27.1 bits (57), Expect = 7.2
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 300 NWTCLYVIAVWVVRGLC 250
NW+ Y IA+ V RGLC
Sbjct: 632 NWSTRYQIAIGVARGLC 648
>01_05_0252 -
19959347-19959541,19960307-19960402,19961028-19961132,
19961220-19961439,19961515-19961584,19961659-19962181,
19962621-19962672,19963644-19963867,19963955-19964022,
19965005-19965231,19965747-19965864,19965938-19966058
Length = 672
Score = 27.1 bits (57), Expect = 7.2
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -2
Query: 264 VRGLCLARAVPWPIEWIAAVKLVPVACTREVLIVQTRVGGAEI 136
VRG C + A+P + + L P+A E + + R+GG +
Sbjct: 14 VRGCCRSAAIPLHLPPSSFSLLSPIAKGSESTVYEARLGGERV 56
>12_02_0693 -
22207582-22207620,22208421-22208597,22209258-22209347,
22210215-22210280,22210473-22210570,22210669-22210789,
22210875-22212477,22213332-22213915
Length = 925
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 35 WTTARSAEPSSAASDTAVPTAVVRAGYSSTVAVHISAPPTR 157
W+ +RSA SSAA+ TA P + + + SAPP +
Sbjct: 36 WSNSRSASASSAAAATAPPAPLYDDLFGAAAP---SAPPPK 73
>01_01_0234 - 1961884-1962627
Length = 247
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 262 QGPMSGPCGPLAYRMDCCGQVG 197
QG PCGPL Y++ C G
Sbjct: 53 QGQADKPCGPLDYQVYCNNSTG 74
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,579,985
Number of Sequences: 37544
Number of extensions: 256562
Number of successful extensions: 870
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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