Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10e04
         (457 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090817-1|BAC57909.1|  344|Anopheles gambiae gag-like protein p...    29   0.077
AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         26   0.55 
DQ437578-1|ABD96048.1|  234|Anopheles gambiae short neuropeptide...    25   1.3  
AY344832-1|AAR05803.1|  333|Anopheles gambiae ICHIT protein.           24   2.2  
AF457551-1|AAL68781.1|  406|Anopheles gambiae calreticulin protein.    24   2.9  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    23   6.7  
AY344831-1|AAR05802.1|  333|Anopheles gambiae ICHIT protein.           23   6.7  
AF046924-1|AAC08530.1|  122|Anopheles gambiae mucin protein.           23   6.7  

>AB090817-1|BAC57909.1|  344|Anopheles gambiae gag-like protein
           protein.
          Length = 344

 Score = 29.1 bits (62), Expect = 0.077
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 211 CGQVGPCCVHARGAYCSNSCWRCG 140
           C +VG    H R    SN CW+CG
Sbjct: 280 CWKVGHTSYHCREPDRSNLCWKCG 303


>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 26.2 bits (55), Expect = 0.55
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
 Frame = +2

Query: 26  CAPWTTARSAEPSSAASDTAVPT---AVVRAGYSSTVAVHISAPPTRV*TISTSRVHATG 196
           C+P +TA SA  SS+A+ +  PT   A V  G     +V   A P +   I +      G
Sbjct: 238 CSPLSTASSASCSSSAAGSLCPTSPPASVSNGEQPASSVGDPANPQQPSVIFSPVPRLAG 297

Query: 197 TNLTAAIHSIGQGTARARH 253
           ++  AA  S       + H
Sbjct: 298 SSPAAAPPSPPTSAGESNH 316


>DQ437578-1|ABD96048.1|  234|Anopheles gambiae short neuropeptide F
           prepropeptide protein.
          Length = 234

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 38  TTARSAEPSSAASDTAVPTAVVRAGYS 118
           TT + A+P++ AS+   PT  +R G S
Sbjct: 181 TTGQQAQPANEASEKRAPTQRLRWGRS 207


>AY344832-1|AAR05803.1|  333|Anopheles gambiae ICHIT protein.
          Length = 333

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 5/89 (5%)
 Frame = +2

Query: 29  APWTTARSAE--PSSAASDTAV---PTAVVRAGYSSTVAVHISAPPTRV*TISTSRVHAT 193
           AP TT   ++  P    + T V   PTA      S+T       PP    T +T  +  T
Sbjct: 166 APTTTTTWSDQPPPPTTTTTTVWTDPTATTTTPASTTTTTWSDLPPPPPTTTTTVWIDPT 225

Query: 194 GTNLTAAIHSIGQGTARARHRPLTTQTAI 280
            T  T A  +    +      P TT T +
Sbjct: 226 ATTTTHAPTTTTTWSDLPPPPPTTTTTTV 254


>AF457551-1|AAL68781.1|  406|Anopheles gambiae calreticulin protein.
          Length = 406

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +1

Query: 46  KKRRALQCSLRYSRAHSCSTSRLLLHGSRAYL 141
           K  + + C   Y +   CS  +  LHG   YL
Sbjct: 95  KHEQNIDCGGGYLKVFDCSVDQKDLHGETPYL 126


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 298 IAAINFKLILNTETWTVSILTTA*IQKKN-KIKKC 399
           ++  +F LI  TETW V  + +A +   N  + +C
Sbjct: 101 VSEADFDLIALTETWLVDNIPSALLFNNNFSVYRC 135


>AY344831-1|AAR05802.1|  333|Anopheles gambiae ICHIT protein.
          Length = 333

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
 Frame = +2

Query: 29  APWTTARSAE--PSSAASDTAV---PTAVVRAGYSSTVAVHISAPPTRV*TISTSRVHAT 193
           AP TT   ++  P    + T V   PTA      S+T       PP    T +T  +  T
Sbjct: 166 APTTTTTWSDQPPPPTTTTTTVWTDPTATTTTPASTTTTTWSDLPPPPPTTTTTVWIDPT 225

Query: 194 GTNLTAAIHSIGQGTARARHRPLTTQTAI 280
            T  T    +    +      P TT T +
Sbjct: 226 ATTTTHVPTTTTTWSDLPPPPPTTTTTTV 254


>AF046924-1|AAC08530.1|  122|Anopheles gambiae mucin protein.
          Length = 122

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
 Frame = +2

Query: 29  APWTTARSAEPSSAA---SDTAVPTAVVRAGYSSTVAVHISAPPTRV*TISTSRVHATGT 199
           AP TT  +   ++ A   + T  PT         T    ++   T   T+++  V  TG+
Sbjct: 30  APATTTVAPTTTTVAPTTTTTVAPTTTTTVAPGQTTTTTVAPGQTTTTTVASGPVTTTGS 89

Query: 200 NLTAAIHSIGQGTARA 247
             T    S  Q    A
Sbjct: 90  TDTTTPSSAPQDVKAA 105


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 499,488
Number of Sequences: 2352
Number of extensions: 10934
Number of successful extensions: 28
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 39119412
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)