Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10e02
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   1.7  
SPCC736.10c |mrps8||mitochondrial ribosomal protein subunit S8|S...    26   2.3  
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    26   2.3  
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S...    25   5.2  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    24   6.9  
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    24   9.1  
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc...    24   9.1  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    24   9.1  
SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    24   9.1  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    24   9.1  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    24   9.1  
SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   9.1  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 25/77 (32%), Positives = 38/77 (49%)
 Frame = -1

Query: 360  KKLVKRYYKFPKMLRATILRAKKTFTANTLRVKICLNKRQYSSKPDRCDAHMNELPVPCG 181
            ++L+KR    PK+L   +   +K  + N LR KI   ++ Y S P      +N     CG
Sbjct: 3253 QQLLKRDDFIPKILNYNL---EKELSIN-LRRKI---EQDYFSNPIFTFDSVNRASKACG 3305

Query: 180  PWEPWYKDMQSYYNKVL 130
            P   W K + + Y+KVL
Sbjct: 3306 PLLLWIKSICN-YSKVL 3321


>SPCC736.10c |mrps8||mitochondrial ribosomal protein subunit
           S8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 152

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 100 IRHDDIHGKFVLKFLATSPTRSTKRXWL 17
           I+  DIHG   L  + T    +T+R WL
Sbjct: 45  IQRGDIHGPDALPTITTRQNVATRRLWL 72


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +2

Query: 209 WASHRSGFDEYCLLFKH 259
           + SH SGF EYC LF H
Sbjct: 38  YESH-SGFSEYCTLFGH 53


>SPBC1773.03c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = -2

Query: 245 DNIRQSLIDVTPI*MSFQYRVDHGSRGTKTCKAIITRFW 129
           D +   L+   P   +  Y  + GS   +TC  +I ++W
Sbjct: 91  DKLANLLVSEHPDVFARAYFANSGSEAVETCLKLILQYW 129


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 345 RYYKFPKM-LRATILRAKKTFTANTLRVKICLNKRQYSSKPD 223
           RY   P M L AT     K    NTLR++ CL  +   ++P+
Sbjct: 676 RYQGIPFMALTATANEIVKKDIINTLRMENCLELKSSFNRPN 717


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
 Frame = -3

Query: 136 GSGDWRCLVCFLIR----HDDIHGKFVLKF--LATSPTRSTKRXWLKNVR 5
           G+    CL+   IR    HD++H KF   F  LA     S    WL   R
Sbjct: 118 GAAAASCLISLSIRDDVHHDNVHWKFTAAFVVLAFVSAASNIFEWLSATR 167


>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 447

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -1

Query: 300 AKKTFTANTLRVKICLNKRQYSSKPD-RCDAHMNELPVPCGPWE 172
           AKKT   N L  + CL   QY    + R  AH+ +   P G  E
Sbjct: 380 AKKTNLVNDLDNRHCLTPTQYEEAIELRHQAHLKKNFTPKGSIE 423


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 23/86 (26%), Positives = 33/86 (38%)
 Frame = -1

Query: 369 IKSKKLVKRYYKFPKMLRATILRAKKTFTANTLRVKICLNKRQYSSKPDRCDAHMNELPV 190
           I SK + KR   F  M R    R +K +        I   +R + S  D    + + +P 
Sbjct: 537 ISSKAISKRGKDFA-MRRDERFRGRKPYRGGP---PIHHGERHFDSGND-WHGNPSTVPP 591

Query: 189 PCGPWEPWYKDMQSYYNKVLVIGVAW 112
           P  P+ P Y  M   Y+   V    W
Sbjct: 592 PTNPYNPGYPYMDPNYSSGYVSQPPW 617


>SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 242

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +3

Query: 96  RMRKQTKQRQSPEPCYNSFACLCTTAPMVHTVLEAHSYGRHIDQALTNIVS 248
           R+RK+++  +  +  Y  F       P + T+L  H++  + DQAL ++ S
Sbjct: 60  RLRKRSENVRLTQARYAIFHIFL---PFILTLLLYHNFYNYFDQALADLNS 107


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -1

Query: 168  WYKDMQSYYNKVLVIGVAWFAFSFG 94
            W   +   Y  ++  GVA F F FG
Sbjct: 1176 WSYMLDGIYQSLVCFGVALFVFKFG 1200


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 255 LNKRQYSSKPDRCDAHMNELPVPCG 181
           LN   Y S+P  C   +N+LP   G
Sbjct: 110 LNLETYYSRPSECLMMLNQLPFCLG 134


>SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +3

Query: 96  RMRKQTKQRQSPEPCYNSFACLCTTAPMVHTVLEAHSYGRHIDQALTNIVS 248
           R+RK+++  +  +  Y  F       P + T+L  H++  + DQAL ++ S
Sbjct: 60  RLRKRSENVRLTQARYAIFHIFL---PFILTLLLYHNFYNYFDQALADLNS 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,577,760
Number of Sequences: 5004
Number of extensions: 29715
Number of successful extensions: 89
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)