Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10e01
         (883 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    27   0.26 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   2.4  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    23   4.2  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   7.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   7.3  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   9.7  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 251 NYGPAQLPRPQDEYPIGPEVMEMADPTFADEEAYR 147
           NY P+Q P P+   P+   V    +PT  +E+ +R
Sbjct: 215 NYSPSQSPEPESVRPLSLVVRRCEEPT--EEKPWR 247


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 230 PRPQDEYPIGPEVMEMADP 174
           P P  E P+ PE   +A P
Sbjct: 80  PEPDPEIPVAPEPAPLASP 98


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 353 ALRSNLWPGAAAFA 312
           +L + LWP AAAFA
Sbjct: 563 SLDTRLWPRAAAFA 576


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 386 SSSLTPERAVAALRSNLWPGAAAFATSGQKSECMYIGWGLKF 261
           SS+  PE+     + N++       T G + +  YI WG+KF
Sbjct: 20  SSTQMPEKVRE--KWNVFDDPPREPTVGSEVKRTYIEWGVKF 59


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 386 SSSLTPERAVAALRSNLWPGAAAFATSGQKSECMYIGWGLKF 261
           SS+  PE+     + N++       T G + +  YI WG+KF
Sbjct: 20  SSTQMPEKVRE--KWNVFDDPPREPTVGSEVKRTYIEWGVKF 59


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 353 ALRSNLWPGAAAFA 312
           +L + +WP +AAFA
Sbjct: 521 SLETRIWPRSAAFA 534


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,988
Number of Sequences: 336
Number of extensions: 2486
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24410188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)