Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10e01
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    27   3.5  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    26   6.2  

>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 363 SLRRQRRTAADTPRRHTFEPRVFRQRRE 446
           SL  Q ++A    + ++F+P++FR+ RE
Sbjct: 522 SLSSQNKSAPTAKKNNSFKPKLFRRSRE 549


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -3

Query: 599 SSLTYWVHHGRHILKQGRTLWWNPNA 522
           + LT W++    +L    T+WW+P++
Sbjct: 213 NGLTDWIYE-EEVLSSPSTIWWSPDS 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,600,727
Number of Sequences: 5004
Number of extensions: 41854
Number of successful extensions: 120
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)