Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10e01
(883 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132795-2|CAI20497.1| 716|Homo sapiens protein ( ial spokehead... 196 7e-50
BC057785-1|AAH57785.1| 716|Homo sapiens RSHL1 protein protein. 194 5e-49
AK223347-1|BAD97067.1| 717|Homo sapiens radial spokehead-like 1... 194 5e-49
AL132795-1|CAI20496.1| 469|Homo sapiens protein ( Human DNA seq... 112 2e-24
BC106949-1|AAI06950.1| 600|Homo sapiens RSHL3 protein protein. 95 2e-19
BA000025-63|BAB63315.1| 136|Homo sapiens SPR1 protein. 32 3.2
AL773544-4|CAI18481.1| 136|Homo sapiens psoriasis susceptibilit... 32 3.2
AL662867-4|CAI17721.1| 136|Homo sapiens psoriasis susceptibilit... 32 3.2
AL662844-4|CAI18325.1| 136|Homo sapiens psoriasis susceptibilit... 32 3.2
AF484420-1|AAO49377.1| 136|Homo sapiens psoriasis susceptibilit... 32 3.2
AB202103-4|BAE78627.1| 136|Homo sapiens chromosome 6 open readi... 32 3.2
AB103620-3|BAF31284.1| 136|Homo sapiens hypothetical protein pr... 32 3.2
AB088114-3|BAC54949.1| 136|Homo sapiens hypothetical protein pr... 32 3.2
AB031480-1|BAA88131.1| 136|Homo sapiens SPR1 protein. 32 3.2
>AL132795-2|CAI20497.1| 716|Homo sapiens protein ( ial spokehead-like
1, a novel ).).
Length = 716
Score = 196 bits (479), Expect = 7e-50
Identities = 107/247 (43%), Positives = 139/247 (56%), Gaps = 2/247 (0%)
Frame = -3
Query: 875 PDQIRVARLTVRCMTGNLDAEVQSFPPFEGTERNYLRAQLARIQAGTSVSPQGFYTFXXX 696
P QI +AR + TG LDA + S+PPF G E NYLRAQ+ARI AGT VSP GFY F
Sbjct: 449 PAQIVIARKIKKFFTGRLDAPIISYPPFPGNESNYLRAQIARISAGTHVSPLGFYQFGEE 508
Query: 695 XXXXXXXXXXXXDLNFNPNPFYHGHSMKDLLDSSLTYWVHHGRHILKQGRTLWWNP--NA 522
+ +F NP + G + DL++S L+ WVHH +HIL QGR W+N
Sbjct: 509 EGEEEEEAEGGRN-SFEENPDFEGIQVIDLVES-LSNWVHHVQHILSQGRCNWFNSIQKN 566
Query: 521 GMXXXXXXXXXXXXXXXXXXXXXPLFTSLSEDSRLEGMTAWSVRSSSSLTPERAVAALRS 342
PL T +SED ++ + W+ R SS+L P+ A+A L+S
Sbjct: 567 EEEEEEEDEEKDDSDYIEQEVGLPLLTPISEDLEIQNIPPWTTRLSSNLIPQYAIAVLQS 626
Query: 341 NLWPGAAAFATSGQKSECMYIGWGLKFDPPNYGPAQLPRPQDEYPIGPEVMEMADPTFAD 162
NLWPGA AF+ +G+K E YIGWG K+ P NY P P EYP GPE+ EM DP+ +
Sbjct: 627 NLWPGAYAFS-NGKKFENFYIGWGHKYSPDNYTPPVPPPVYQEYPSGPEITEMDDPSVEE 685
Query: 161 EEAYRIA 141
E+A+R A
Sbjct: 686 EQAFRAA 692
>BC057785-1|AAH57785.1| 716|Homo sapiens RSHL1 protein protein.
Length = 716
Score = 194 bits (472), Expect = 5e-49
Identities = 112/252 (44%), Positives = 141/252 (55%), Gaps = 6/252 (2%)
Frame = -3
Query: 878 TPDQIRVARLTVRCMTGNLDAEVQSFPPFEGTERNYLRAQLARIQAGTSVSPQGFYTFXX 699
TP QI AR + TG LD V S+PPF G E NYLRAQ+ARI A T VSP GFY F
Sbjct: 444 TPAQIVNARKIKKFFTGYLDTPVVSYPPFPGNEANYLRAQIARISAATQVSPLGFYQFSE 503
Query: 698 XXXXXXXXXXXXXDLNFNPNPFYHGHSMKDLLDSSLTYWVHHGRHILKQGRTLWWNP--- 528
D ++ NP + G + +L+DS + WVHH +HIL QGR W NP
Sbjct: 504 EEGDEEEEGGAGRD-SYEENPDFEGIPVLELVDS-MANWVHHTQHILPQGRCTWVNPLQK 561
Query: 527 --NAGMXXXXXXXXXXXXXXXXXXXXXPLFTSLSEDSRLEGMTAWSVRSSSSLTPERAVA 354
PL T LSED+ + + W+ R S SL P+ +VA
Sbjct: 562 TEEEEDLGEEEEKADEGPEEVEQEVGPPLLTPLSEDAEIMHLAPWTTRLSCSLCPQYSVA 621
Query: 353 ALRSNLWPGAAAFATSGQKSECMYIGWGLKFDPPNYGPAQLPRP-QDEYPIGPEVMEMAD 177
+RSNLWPGA A+A SG+K E +YIGWG K+ P ++ PA LP P Q EYP GPE+MEM+D
Sbjct: 622 VVRSNLWPGAYAYA-SGKKFENIYIGWGHKYSPESFNPA-LPAPIQQEYPSGPEIMEMSD 679
Query: 176 PTFADEEAYRIA 141
PT +E+A + A
Sbjct: 680 PTVEEEQALKAA 691
>AK223347-1|BAD97067.1| 717|Homo sapiens radial spokehead-like 1
variant protein.
Length = 717
Score = 194 bits (472), Expect = 5e-49
Identities = 112/252 (44%), Positives = 141/252 (55%), Gaps = 6/252 (2%)
Frame = -3
Query: 878 TPDQIRVARLTVRCMTGNLDAEVQSFPPFEGTERNYLRAQLARIQAGTSVSPQGFYTFXX 699
TP QI AR + TG LD V S+PPF G E NYLRAQ+ARI A T VSP GFY F
Sbjct: 445 TPAQIVNARKIKKFFTGYLDTPVVSYPPFPGNEANYLRAQIARISAATQVSPLGFYQFSE 504
Query: 698 XXXXXXXXXXXXXDLNFNPNPFYHGHSMKDLLDSSLTYWVHHGRHILKQGRTLWWNP--- 528
D ++ NP + G + +L+DS + WVHH +HIL QGR W NP
Sbjct: 505 EEGDEEEEGGAGRD-SYEENPDFEGIPVLELVDS-MANWVHHTQHILPQGRCTWVNPLQK 562
Query: 527 --NAGMXXXXXXXXXXXXXXXXXXXXXPLFTSLSEDSRLEGMTAWSVRSSSSLTPERAVA 354
PL T LSED+ + + W+ R S SL P+ +VA
Sbjct: 563 TEEEEDLGEEEEKADEGPEEVEQEVGPPLLTPLSEDAEIMHLAPWTTRLSCSLCPQYSVA 622
Query: 353 ALRSNLWPGAAAFATSGQKSECMYIGWGLKFDPPNYGPAQLPRP-QDEYPIGPEVMEMAD 177
+RSNLWPGA A+A SG+K E +YIGWG K+ P ++ PA LP P Q EYP GPE+MEM+D
Sbjct: 623 VVRSNLWPGAYAYA-SGKKFENIYIGWGHKYSPESFNPA-LPAPIQQEYPSGPEIMEMSD 680
Query: 176 PTFADEEAYRIA 141
PT +E+A + A
Sbjct: 681 PTVEEEQALKAA 692
>AL132795-1|CAI20496.1| 469|Homo sapiens protein ( Human DNA
sequence from clone RP3-412I7 on chromosome 6q22.1-22.33
Contains a gene similar to murine radial spokehead-like
1, a novel ).
Length = 469
Score = 112 bits (269), Expect = 2e-24
Identities = 51/103 (49%), Positives = 69/103 (66%)
Frame = -3
Query: 449 LFTSLSEDSRLEGMTAWSVRSSSSLTPERAVAALRSNLWPGAAAFATSGQKSECMYIGWG 270
L T +SED ++ + W+ R SS+L P+ A+A L+SNLWPGA AF+ +G+K E YIGWG
Sbjct: 344 LLTPISEDLEIQNIPPWTTRLSSNLIPQYAIAVLQSNLWPGAYAFS-NGKKFENFYIGWG 402
Query: 269 LKFDPPNYGPAQLPRPQDEYPIGPEVMEMADPTFADEEAYRIA 141
K+ P NY P P EYP GPE+ EM DP+ +E+A+R A
Sbjct: 403 HKYSPDNYTPPVPPPVYQEYPSGPEITEMDDPSVEEEQAFRAA 445
>BC106949-1|AAI06950.1| 600|Homo sapiens RSHL3 protein protein.
Length = 600
Score = 95.5 bits (227), Expect = 2e-19
Identities = 51/108 (47%), Positives = 64/108 (59%)
Frame = -3
Query: 875 PDQIRVARLTVRCMTGNLDAEVQSFPPFEGTERNYLRAQLARIQAGTSVSPQGFYTFXXX 696
P QI +AR + TG LDA + S+PPF G E NYLRAQ+ARI AGT VSP GFY F
Sbjct: 449 PAQIVIARKIKKFFTGRLDAPIISYPPFPGNESNYLRAQIARISAGTHVSPLGFYQFGEE 508
Query: 695 XXXXXXXXXXXXDLNFNPNPFYHGHSMKDLLDSSLTYWVHHGRHILKQ 552
+ +F NP + G + DL++ SL+ WVHH +HIL Q
Sbjct: 509 EGEEEEEAEGGRN-SFEENPDFEGIQVIDLVE-SLSNWVHHVQHILSQ 554
>BA000025-63|BAB63315.1| 136|Homo sapiens SPR1 protein.
Length = 136
Score = 31.9 bits (69), Expect = 3.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 260 DPPNYGPAQLPRPQDEYPIGPEVME 186
+PP P Q PRP D +P GP+ E
Sbjct: 85 EPPRTDPPQPPRPDDPWPAGPQPPE 109
>AL773544-4|CAI18481.1| 136|Homo sapiens psoriasis susceptibility 1
candidate 2 protein.
Length = 136
Score = 31.9 bits (69), Expect = 3.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 260 DPPNYGPAQLPRPQDEYPIGPEVME 186
+PP P Q PRP D +P GP+ E
Sbjct: 85 EPPRTDPPQPPRPDDPWPAGPQPPE 109
>AL662867-4|CAI17721.1| 136|Homo sapiens psoriasis susceptibility 1
candidate 2 protein.
Length = 136
Score = 31.9 bits (69), Expect = 3.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 260 DPPNYGPAQLPRPQDEYPIGPEVME 186
+PP P Q PRP D +P GP+ E
Sbjct: 85 EPPRTDPPQPPRPDDPWPAGPQPPE 109
>AL662844-4|CAI18325.1| 136|Homo sapiens psoriasis susceptibility 1
candidate 2 protein.
Length = 136
Score = 31.9 bits (69), Expect = 3.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 260 DPPNYGPAQLPRPQDEYPIGPEVME 186
+PP P Q PRP D +P GP+ E
Sbjct: 85 EPPRTDPPQPPRPDDPWPAGPQPPE 109
>AF484420-1|AAO49377.1| 136|Homo sapiens psoriasis susceptibility 1
candidate 2 protein.
Length = 136
Score = 31.9 bits (69), Expect = 3.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 260 DPPNYGPAQLPRPQDEYPIGPEVME 186
+PP P Q PRP D +P GP+ E
Sbjct: 85 EPPRTDPPQPPRPDDPWPAGPQPPE 109
>AB202103-4|BAE78627.1| 136|Homo sapiens chromosome 6 open reading
frame 17 protein.
Length = 136
Score = 31.9 bits (69), Expect = 3.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 260 DPPNYGPAQLPRPQDEYPIGPEVME 186
+PP P Q PRP D +P GP+ E
Sbjct: 85 EPPRTDPPQPPRPDDPWPAGPQPPE 109
>AB103620-3|BAF31284.1| 136|Homo sapiens hypothetical protein
protein.
Length = 136
Score = 31.9 bits (69), Expect = 3.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 260 DPPNYGPAQLPRPQDEYPIGPEVME 186
+PP P Q PRP D +P GP+ E
Sbjct: 85 EPPRTDPPQPPRPDDPWPAGPQPPE 109
>AB088114-3|BAC54949.1| 136|Homo sapiens hypothetical protein
protein.
Length = 136
Score = 31.9 bits (69), Expect = 3.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 260 DPPNYGPAQLPRPQDEYPIGPEVME 186
+PP P Q PRP D +P GP+ E
Sbjct: 85 EPPRTDPPQPPRPDDPWPAGPQPPE 109
>AB031480-1|BAA88131.1| 136|Homo sapiens SPR1 protein.
Length = 136
Score = 31.9 bits (69), Expect = 3.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 260 DPPNYGPAQLPRPQDEYPIGPEVME 186
+PP P Q PRP D +P GP+ E
Sbjct: 85 EPPRTDPPQPPRPDDPWPAGPQPPE 109
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,361,362
Number of Sequences: 237096
Number of extensions: 1694999
Number of successful extensions: 4606
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4598
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11270645666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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