Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10e01
         (883 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY094708-1|AAM11061.1|  708|Drosophila melanogaster GH13165p pro...    68   2e-11
AE013599-3771|AAF47136.1|  708|Drosophila melanogaster CG3121-PA...    68   2e-11
AY047530-1|AAK77262.1|  784|Drosophila melanogaster GH03554p pro...    29   8.5  
AE014297-2286|AAF55372.1|  784|Drosophila melanogaster CG16941-P...    29   8.5  

>AY094708-1|AAM11061.1|  708|Drosophila melanogaster GH13165p
           protein.
          Length = 708

 Score = 67.7 bits (158), Expect = 2e-11
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
 Frame = -3

Query: 449 LFTSLSEDSRLEGMTAWSVRSSSSLTPERA-VAALRSNLWPGAAAFATSGQKSECMYIGW 273
           + +S + D   E   +W  R +S  T ++  +  ++SN+WPGA  F    +  E +Y+GW
Sbjct: 575 ILSSCANDMNPEVPVSWLARMTSKYTNQKERMLVMQSNVWPGAYTFIFE-KTCESIYLGW 633

Query: 272 GLKFDPPNYGPAQLPRPQDEYPIGPE-VMEMADPTFADEEAYR 147
           G K+   N     LP  Q+E+P  PE  +E  DPT  +EEAY+
Sbjct: 634 GHKYYARNIPFKHLPMVQEEFPHNPEDFVEANDPTVEEEEAYK 676



 Score = 60.1 bits (139), Expect = 4e-09
 Identities = 27/56 (48%), Positives = 40/56 (71%)
 Frame = -3

Query: 878 TPDQIRVARLTVRCMTGNLDAEVQSFPPFEGTERNYLRAQLARIQAGTSVSPQGFY 711
           TP QI V+R   + +TG+L+A+V S+P F G E++YLR  + RI AGT ++P G+Y
Sbjct: 377 TPRQIVVSRQIKKFLTGDLEADVISYPCFPGKEKHYLRTLIGRITAGTYIAPVGYY 432


>AE013599-3771|AAF47136.1|  708|Drosophila melanogaster CG3121-PA
           protein.
          Length = 708

 Score = 67.7 bits (158), Expect = 2e-11
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
 Frame = -3

Query: 449 LFTSLSEDSRLEGMTAWSVRSSSSLTPERA-VAALRSNLWPGAAAFATSGQKSECMYIGW 273
           + +S + D   E   +W  R +S  T ++  +  ++SN+WPGA  F    +  E +Y+GW
Sbjct: 575 ILSSCANDMNPEVPVSWLARMTSKYTNQKERMLVMQSNVWPGAYTFIFE-KTCESIYLGW 633

Query: 272 GLKFDPPNYGPAQLPRPQDEYPIGPE-VMEMADPTFADEEAYR 147
           G K+   N     LP  Q+E+P  PE  +E  DPT  +EEAY+
Sbjct: 634 GHKYYARNIPFKHLPMVQEEFPHNPEDFVEANDPTVEEEEAYK 676



 Score = 60.1 bits (139), Expect = 4e-09
 Identities = 27/56 (48%), Positives = 40/56 (71%)
 Frame = -3

Query: 878 TPDQIRVARLTVRCMTGNLDAEVQSFPPFEGTERNYLRAQLARIQAGTSVSPQGFY 711
           TP QI V+R   + +TG+L+A+V S+P F G E++YLR  + RI AGT ++P G+Y
Sbjct: 377 TPRQIVVSRQIKKFLTGDLEADVISYPCFPGKEKHYLRTLIGRITAGTYIAPVGYY 432


>AY047530-1|AAK77262.1|  784|Drosophila melanogaster GH03554p
           protein.
          Length = 784

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 266 KFDPPNYGPAQLPRPQDEYPIGP 198
           K+DP    P Q P P DEY I P
Sbjct: 400 KYDPKATQPKQAPMPTDEYLISP 422


>AE014297-2286|AAF55372.1|  784|Drosophila melanogaster CG16941-PA
           protein.
          Length = 784

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 266 KFDPPNYGPAQLPRPQDEYPIGP 198
           K+DP    P Q P P DEY I P
Sbjct: 400 KYDPKATQPKQAPMPTDEYLISP 422


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,129,413
Number of Sequences: 53049
Number of extensions: 537674
Number of successful extensions: 1495
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1491
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4291240668
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)