Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10d24
         (267 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   1.7  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   2.3  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    20   5.3  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    20   5.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    20   5.3  
AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory recept...    19   7.0  

>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.4 bits (43), Expect = 1.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 16  HPRRYVSEFNISS 54
           HP R+  +FNISS
Sbjct: 101 HPHRFRLKFNISS 113


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 2.3
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 4   CHRRHPRRYVSEFNISSCS 60
           C RRH +  +   ++S+CS
Sbjct: 65  CERRHIKGAIPVVSLSTCS 83


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 19.8 bits (39), Expect = 5.3
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +1

Query: 4   CHRRHPRRYVSEFNISSCSTCKW*CTE 84
           C  +   +Y+ E   +S +TC   C+E
Sbjct: 48  CENQKCVKYLVEDEETSLATCNMLCSE 74


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 19.8 bits (39), Expect = 5.3
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 229  SLFMFCHLRDFVV 267
            SLF FC   +F++
Sbjct: 978  SLFFFCMAAEFII 990


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 19.8 bits (39), Expect = 5.3
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 229  SLFMFCHLRDFVV 267
            SLF FC   +F++
Sbjct: 978  SLFFFCMAAEFII 990


>AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory receptor
           candidate 31 protein.
          Length = 250

 Score = 19.4 bits (38), Expect = 7.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 211 QFYRNAEVKTLILLNISLC 155
           QFY+ A      +++ SLC
Sbjct: 68  QFYKTAYSAIFTVIDFSLC 86


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,272
Number of Sequences: 336
Number of extensions: 501
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 47
effective length of database: 106,793
effective search space used:  4378513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)