Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10d23
         (761 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       24   1.5  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    24   1.5  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    24   1.5  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   2.7  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    23   2.7  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    23   2.7  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   6.1  
AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax prot...    22   6.1  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   8.1  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   8.1  

>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 283 NTNLKLKKQYNAVKSDAEELRSAR 212
           N  +KLKK+  AVK   E+ R  R
Sbjct: 56  NRRMKLKKELRAVKEINEQARRER 79


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 283 NTNLKLKKQYNAVKSDAEELRSAR 212
           N  +KLKK+  AVK   E+ R  R
Sbjct: 207 NRRMKLKKELRAVKEINEQARRER 230


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 283 NTNLKLKKQYNAVKSDAEELRSAR 212
           N  +KLKK+  AVK   E+ R  R
Sbjct: 266 NRRMKLKKELRAVKEINEQARRER 289


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 346 PPDKRRWAMRYTWNPQNNPVLNTNLKL 266
           PP  +     +   PQ+NP++NT   L
Sbjct: 57  PPSPQEVYYHHQTIPQDNPIINTETGL 83


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 346 PPDKRRWAMRYTWNPQNNPVLNTNLKL 266
           PP  +     +   PQ+NP++NT   L
Sbjct: 57  PPSPQEVYYHHQTIPQDNPIINTETGL 83


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 346 PPDKRRWAMRYTWNPQNNPVLNTNLKL 266
           PP  +     +   PQ+NP++NT   L
Sbjct: 57  PPSPQEVYYHHQTIPQDNPIINTETGL 83


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 283 NTNLKLKKQYNAVKSDAEELRSAR 212
           N  +KLKK+  A+K   E+ + A+
Sbjct: 273 NRRMKLKKEIQAIKELNEQEKQAQ 296


>AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax
           protein.
          Length = 96

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 283 NTNLKLKKQYNAVKSDAEELRSAR 212
           N  +KLKK+  A+K   E+ + A+
Sbjct: 55  NRRMKLKKEIQAIKELNEQEKQAQ 78


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 40  TPSVNNEKRKS 8
           TP+ NN+KRKS
Sbjct: 325 TPANNNDKRKS 335


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 40  TPSVNNEKRKS 8
           TP+ NN+KRKS
Sbjct: 325 TPANNNDKRKS 335


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,424
Number of Sequences: 336
Number of extensions: 2596
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20442493
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)