Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10d22
         (775 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1055 - 33798162-33798290,33798417-33798604,33798707-337987...   136   2e-32
12_02_0137 + 14153603-14153629,14154136-14154586,14155066-141552...   109   2e-24
06_03_1219 - 28491185-28494415                                         30   1.8  
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551...    29   4.1  
02_04_0572 + 23972319-23973683                                         29   4.1  
02_02_0032 - 6227556-6227926,6228322-6231085                           29   4.1  
06_03_1220 - 28505306-28508497                                         29   5.4  
06_03_1217 - 28484007-28487237                                         29   5.4  
04_02_0006 + 8455219-8457469,8457560-8457924                           29   5.4  
02_02_0034 - 6246183-6246553,6246672-6249699                           29   5.4  
02_01_0168 + 1162447-1162866,1162940-1163317,1163606-1163829,116...    29   5.4  
01_06_0224 - 27672201-27672336,27672439-27672507,27672948-276730...    29   5.4  
11_06_0129 - 20397179-20397537,20397749-20400497                       28   9.5  
04_03_0910 + 20751014-20753437                                         28   9.5  
03_05_0105 - 20861130-20861384,20861472-20862262,20862364-208626...    28   9.5  
02_05_1329 - 35724567-35725255,35725626-35725682,35727667-35729050     28   9.5  
02_02_0473 - 10727908-10728052,10728367-10728440,10728660-107288...    28   9.5  

>02_05_1055 - 33798162-33798290,33798417-33798604,33798707-33798767,
            33799045-33799122,33799250-33799472,33799599-33799824,
            33799922-33800116,33800210-33800627,33800904-33801182
          Length = 598

 Score =  136 bits (329), Expect = 2e-32
 Identities = 79/238 (33%), Positives = 131/238 (55%), Gaps = 4/238 (1%)
 Frame = -1

Query: 775  GKGVTFDSGSLDLKSPK--DLRYMKGDMAGAGCILAITRTAARLKLP-INIRGILPLCEL 605
            GKG+TFDSG  ++K+     +  MK DM G+  +    +   ++K P + +  I+  CE 
Sbjct: 366  GKGLTFDSGGYNIKTGPGCSIELMKFDMGGSAAVFGAAKALGQIKPPGVEVHFIVAACEN 425

Query: 604  MPNGNSPKFGDVAYSANGKSLHIRLPSREGRLLIADSLVYARNYWPKLIIDIGTMSKELI 425
            M +G   + GD+  ++NGK++ +     EGRL +AD+LVYA N     IID+ T++   +
Sbjct: 426  MISGTGMRPGDIVTASNGKTIEVNNTDAEGRLTLADALVYACNQGVDKIIDLATLTGACV 485

Query: 424  YTLDGSACGCYTNSDELFCYLQSASSQTGDRIWRMPLWKFYEDRVRDCHTADVANTGRDE 245
              L  S  G +T SDEL   + +AS  +G++ WRMPL + Y + ++    AD+ NTG  +
Sbjct: 486  VALGPSIAGIFTPSDELAKEVAAASEISGEKFWRMPLEESYWESMKS-GVADMVNTGGRQ 544

Query: 244  FGDSPNCAAFLKQFICD-TKWVHLDTYNIAYSKGRDFPYLRRGMTGRPTRTILEFIFQ 74
             G S   A FLKQF+ +  +W+H+D     ++        +R  TG    T++E++ +
Sbjct: 545  -GGSITAALFLKQFVDEKVQWMHIDMAGPVWND------KKRAATGFGVSTLVEWVLK 595


>12_02_0137 +
           14153603-14153629,14154136-14154586,14155066-14155260,
           14155366-14155628,14155964-14156104,14156188-14156283,
           14156672-14156749,14157134-14157194,14157324-14157511,
           14158441-14158569
          Length = 542

 Score =  109 bits (263), Expect = 2e-24
 Identities = 67/216 (31%), Positives = 112/216 (51%), Gaps = 2/216 (0%)
 Frame = -1

Query: 721 LRYMKGDMAGAGCILAITRTAARLKLP-INIRGILPLCELMPNGNSPKFGDVAYSANGKS 545
           +  MK DM G+  +    +   ++K P + +  I   CE M +G   + GD+  ++NGK+
Sbjct: 330 IELMKKDMGGSAALFGAAKALGQIKPPGVEVHFISAACENMISGTGMRPGDIVTASNGKT 389

Query: 544 LHIRLPSREGRLLIADSLVYARNYWPKLIIDIGTMSKELIYTLDGSACGCYTNSDELFCY 365
           + +     EGRL +AD+LVYA       IID+ T++      L  S  G  T SDEL   
Sbjct: 390 IEVDNTDAEGRLTLADALVYACKLGVDKIIDLATLTGYCRIALGPSIAGILTPSDELDKE 449

Query: 364 LQSASSQTGDRIWRMPLWKFYEDRVRDCHTADVANTGRDEFGDSPNCAAFLKQFICD-TK 188
           + +A   +G++ WR+PL + Y ++++    AD+ NTG    G +     FLKQF+ +  K
Sbjct: 450 VAAAYEASGEKFWRLPLEESYWEQMKS-SVADMLNTG-SPLGGAITAGLFLKQFVDEKVK 507

Query: 187 WVHLDTYNIAYSKGRDFPYLRRGMTGRPTRTILEFI 80
           W+H+D        G  + Y ++  TG    T++E++
Sbjct: 508 WMHVD------MAGPVWNYKKQEATGFGVSTLVEWV 537


>06_03_1219 - 28491185-28494415
          Length = 1076

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +3

Query: 531 NLMCKDFPLALYATSPNLGLFPFGINSHNGRMPRILIGSLSLAAVLVMANMHPAPAMSP 707
           NL+   FP A++  +P L       NS  G +P + +   +LA + +  NM    A+SP
Sbjct: 162 NLLAGQFPSAIWEHTPRLVSLNASNNSFRGTIPSLCVSCPALAVLDLSVNMLTG-AISP 219


>11_01_0676 -
           5511755-5511831,5512857-5513052,5513462-5513577,
           5513752-5514597,5515515-5515766,5522344-5525206
          Length = 1449

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +3

Query: 519 SRDGNLMCKDFPLALYATSPNLGLFPFGINSHNGRMPRILIGSLSLAAVLVM 674
           S +GN +    P  L+  +P+L    FG NS +G +P   + SLS   +L M
Sbjct: 186 SLEGNSLSGQIPSFLFNNTPSLRYLSFGNNSLSGPIPD-GVASLSQLEILDM 236


>02_04_0572 + 23972319-23973683
          Length = 454

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 25/76 (32%), Positives = 39/76 (51%)
 Frame = +3

Query: 426 ISSFDIVPISIISFGQ*LRAYTKLSAMRSRPSRDGNLMCKDFPLALYATSPNLGLFPFGI 605
           +SS D+  ++IIS G+  RA   LS++R     + N + K  P  +    PNL     G+
Sbjct: 194 LSSLDL-SVNIIS-GEIPRALYNLSSLRML-FLEMNFLGKSLPSNIGYALPNLQWLLLGV 250

Query: 606 NSHNGRMPRILIGSLS 653
           N   G +P  L G++S
Sbjct: 251 NMFQGNIPGSL-GNIS 265


>02_02_0032 - 6227556-6227926,6228322-6231085
          Length = 1044

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +3

Query: 531 NLMCKDFPLALYATSPNLGLFPFGINSHNGRMPRILIGSLSLAAVLVMAN 680
           N +  D P  L  +SP+      G+N   G +P  L  S SL  + +M N
Sbjct: 208 NALTGDIP-PLLGSSPSFIYVDLGVNQLTGGIPEFLANSSSLQVIRLMQN 256


>06_03_1220 - 28505306-28508497
          Length = 1063

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +3

Query: 531 NLMCKDFPLALYATSPNLGLFPFGINSHNGRMPRILIGSLSLAAVLVMANM 683
           NL+   FP A++  +P L       NS +G +P + +   +LA + +  N+
Sbjct: 158 NLLAGQFPSAIWEHTPRLVSLNASNNSFHGTIPSLCVSCPALAVLDLSVNV 208


>06_03_1217 - 28484007-28487237
          Length = 1076

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +3

Query: 531 NLMCKDFPLALYATSPNLGLFPFGINSHNGRMPRILIGSLSLAAVLVMANM 683
           NL+   FP A++  +P L       NS +G +P + +   +LA + +  N+
Sbjct: 166 NLLAGQFPSAIWEHTPRLVSLNASNNSFHGSIPSLCVSCPALAVLDLSVNV 216


>04_02_0006 + 8455219-8457469,8457560-8457924
          Length = 871

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 519 SRDGNLMCKDFPLALYATSPNLGLFPFGINSHNGRMPRILIGSLSLAAVLVMANM 683
           S +GN +    P ++   S N   F FG N  +GR+P  L   ++L  + + +NM
Sbjct: 179 SMEGNNLNGSLPKSVGNLSTNFEWFKFGGNQISGRIPDELGNLVNLTLLDINSNM 233


>02_02_0034 - 6246183-6246553,6246672-6249699
          Length = 1132

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +3

Query: 531 NLMCKDFPLALYATSPNLGLFPFGINSHNGRMPRILIGSLSLAAVLVMAN 680
           N +  D P  L  +SP+      G N   GR+P  L  S SL  + +M N
Sbjct: 208 NALTGDIP-PLLGSSPSFVYVDLGGNQLTGRIPEFLANSSSLQVLRLMQN 256


>02_01_0168 +
           1162447-1162866,1162940-1163317,1163606-1163829,
           1163929-1163992,1164521-1164717,1164849-1165062
          Length = 498

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
 Frame = -1

Query: 469 PKLIIDIGTMSKELIYTLDGSACGCYTNSDELFCYLQSASSQTGDRIWR-MPLWKFYEDR 293
           PK++  +  M       +DG+ C  +   D+L  +         + +W     W F+ D 
Sbjct: 355 PKILPCLQAMEPTYTVVVDGTECAYFDQVDQLKDFGAENKESIAELLWAFFHYWAFHHDY 414

Query: 292 VRDCHTADVANT 257
             D  +  + NT
Sbjct: 415 RNDVISVRMGNT 426


>01_06_0224 -
           27672201-27672336,27672439-27672507,27672948-27673040,
           27673245-27673336,27673491-27673577,27673734-27673832,
           27673927-27674026,27674113-27674171,27674361-27674720
          Length = 364

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -1

Query: 559 ANGKSLHIRLPSREGRLLIADSLVYARNYWPKLII-DIGTMSKELIYTLDG 410
           A G    ++  + + RLLI  +LV   N W ++++ D G M  ELI  L G
Sbjct: 289 AGGTGETVKSAAAQPRLLIPVALVMMYNRWNEILVPDYGFMHLELIPMLVG 339


>11_06_0129 - 20397179-20397537,20397749-20400497
          Length = 1035

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/63 (26%), Positives = 34/63 (53%)
 Frame = +3

Query: 495 LSAMRSRPSRDGNLMCKDFPLALYATSPNLGLFPFGINSHNGRMPRILIGSLSLAAVLVM 674
           +S++R+  S  GN++    P   + T P+L       N  +G++P  L  S +L+ +++ 
Sbjct: 265 ISSLRAL-SVQGNMLSGTIPANAFETLPHLEELYMDHNHLHGKIPVSLGNSSNLSMIILG 323

Query: 675 ANM 683
           AN+
Sbjct: 324 ANL 326


>04_03_0910 + 20751014-20753437
          Length = 807

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = -1

Query: 574 DVAYSANGKSLHIRLPSRE 518
           D + SANG++LHIRL +RE
Sbjct: 419 DDSTSANGETLHIRLAARE 437


>03_05_0105 -
           20861130-20861384,20861472-20862262,20862364-20862618,
           20862713-20862827,20862959-20863011,20863113-20863373,
           20863699-20863749,20863863-20864114,20864504-20864726,
           20865317-20865460
          Length = 799

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -1

Query: 508 LIADSLVYARNYWPKLIIDIGTMSKELIYTLDGSACGCYTNSDELFCYL 362
           LI   +   R + PK IID    +K+  +   GS   C+T S+ LF  L
Sbjct: 271 LIKHDISVLRAFNPKYIIDYFRRNKKEGWVSLGSILLCFTGSEALFANL 319


>02_05_1329 - 35724567-35725255,35725626-35725682,35727667-35729050
          Length = 709

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = +3

Query: 519 SRDGNLMCKDFPLALYATSPNLGLFPFGINSHNGRMPRILIGSLSLAAVLVMAN 680
           S   N +    P AL A  PNL L     N   GR+P  L   L  A VLV+++
Sbjct: 105 SLKSNALTGPIPDALPAALPNLKLLYLSANRLQGRIPPTL-ALLHRATVLVLSS 157


>02_02_0473 - 10727908-10728052,10728367-10728440,10728660-10728818,
            10729606-10729774,10730216-10730355,10730469-10730879,
            10731055-10731334,10731508-10731571,10731995-10733281,
            10733363-10733822,10733988-10734356
          Length = 1185

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 334  RIWRMPLWKFYEDRVRDCHTADVANTGRDEFGDSP 230
            R W  P  +FY+D + D H  D+   G  + G +P
Sbjct: 1019 RRWSGPTSQFYDDDLHDAHDHDI--LGSSQLGGAP 1051


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,631,275
Number of Sequences: 37544
Number of extensions: 474294
Number of successful extensions: 1043
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)