Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10d18
(805 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0581 - 18684273-18685814,18686156-18686200,18686393-18686683 33 0.27
03_05_0777 + 27636342-27637115 32 0.46
05_03_0008 + 7332224-7332700,7335136-7335153,7335747-7335848,733... 31 1.4
12_01_0630 - 5203802-5204111,5204896-5204900 29 3.3
08_02_1446 + 27156449-27156790,27157961-27158042,27158698-271587... 29 3.3
01_06_0453 + 29501600-29502403 29 3.3
04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539 29 4.3
03_06_0202 - 32327551-32327907,32328006-32328068,32328195-32329163 29 4.3
01_06_1285 - 35995943-35996087,35996909-35997697,35997802-359978... 29 4.3
01_01_0698 - 5400401-5401015 29 4.3
12_02_0616 - 21246374-21246462,21246605-21247702,21247800-212481... 29 5.7
04_04_1070 + 30579263-30579861,30579970-30580095,30580190-30580394 29 5.7
03_03_0025 + 13848450-13849420,13850921-13851131,13851327-138514... 29 5.7
04_03_0193 + 12477565-12478229,12478298-12478423,12478508-12478688 28 7.6
12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406 28 10.0
06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176 28 10.0
>09_04_0581 - 18684273-18685814,18686156-18686200,18686393-18686683
Length = 625
Score = 33.1 bits (72), Expect = 0.27
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 284 PHSTDRHSDH*VHPRAVRSLPLANKYLYNA 373
P STD H H VHP + S P A+++L +A
Sbjct: 174 PSSTDHHRRHKVHPAFLHSAPSADRFLASA 203
>03_05_0777 + 27636342-27637115
Length = 257
Score = 32.3 bits (70), Expect = 0.46
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 250 RGAHVRRRPRATTLHGQAQRSLSPPPRGPKPA 345
R A + R AT L + +R+L PPP P PA
Sbjct: 187 RDAALSNRAEATALRAELERALQPPPPPPPPA 218
>05_03_0008 +
7332224-7332700,7335136-7335153,7335747-7335848,
7336927-7337202,7337474-7337674
Length = 357
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +3
Query: 651 LHAAHARRVVNACFRAA*TGAAQPARG*RPRSSALLAATSPARFA 785
LH H+ A F + G+ Q G PRS A + SP+RFA
Sbjct: 266 LHHVHSISPSTASFARSPFGSLQHNSGHTPRSPATFSTASPSRFA 310
>12_01_0630 - 5203802-5204111,5204896-5204900
Length = 104
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +1
Query: 253 GAHVRRRPRATTLHGQAQRSLSPPPRGPKPAARQ----*IFVQRGRAARLGASEG 405
G VRRR R TL + R++S R P+P +R+ + QR R GAS G
Sbjct: 2 GTRVRRRWRDGTLRPPSCRAISRRYRSPRPRSREDDTDRVDEQRLRVLAAGASPG 56
>08_02_1446 +
27156449-27156790,27157961-27158042,27158698-27158792,
27159421-27159492,27159572-27159651,27159728-27159827,
27160064-27160141,27160408-27160455,27160570-27160638,
27161035-27161175,27161262-27161516
Length = 453
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Frame = +1
Query: 700 HRQEPHSQREGSGRGRAHCSQRH-RPHVSHTIESAW 804
H P Q G G G H Q+H +PH H W
Sbjct: 47 HHANPRRQHRGGGGGAYHHHQQHYQPHHHHQHHQHW 82
>01_06_0453 + 29501600-29502403
Length = 267
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 220 KVLVDDSHSERGAHVRRRP-RATTLHGQAQRSLSPPPRGPKPA 345
KV V S S + R P +A Q QR+ PPPR P PA
Sbjct: 165 KVAVKKSSSSEVRKLERAPAQAQRQVLQVQRAQPPPPRAPAPA 207
>04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539
Length = 585
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +1
Query: 232 DDSHSERGAHVRRRPRATTLHGQAQRSLSPPPRGPKPAARQ*IFVQRGRAA 384
DD H+E + RR R+ + Q L+PPP P +Q I G AA
Sbjct: 211 DDDHAEAARNGVRRWRSGSGQQQPSTILAPPPPTPTRQKQQGIVFGGGAAA 261
>03_06_0202 - 32327551-32327907,32328006-32328068,32328195-32329163
Length = 462
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -1
Query: 517 VQRRERRCTRGVAAPAVVVRTLSRGSPVLSSPA 419
V+ R+RR T G APAVV + S +P ++ A
Sbjct: 408 VKERDRRRTAGALAPAVVKQQPSESAPATAAAA 440
>01_06_1285 -
35995943-35996087,35996909-35997697,35997802-35997871,
35997989-35998220
Length = 411
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/76 (25%), Positives = 29/76 (38%)
Frame = +1
Query: 232 DDSHSERGAHVRRRPRATTLHGQAQRSLSPPPRGPKPAARQ*IFVQRGRAARLGASEGAG 411
D S RG H +R A ++ SPP P + + GR + A G G
Sbjct: 209 DGYRSSRGRHAQRAAAAAAQEELSREETSPPTASTSPETLEALIKADGRV--MAAVTGGG 266
Query: 412 GARRD*IILESRG*GS 459
R ++++ GS
Sbjct: 267 RTRASSVLMQLISCGS 282
>01_01_0698 - 5400401-5401015
Length = 204
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Frame = -3
Query: 785 CETCG---RCRCEQCARPRP-LPSRWLCGSCLCSAEACVD 678
CE CG C E R R RW+CG C +A A D
Sbjct: 86 CECCGMQEECTPEYARRVRERYCGRWVCGLCAAAASAEAD 125
>12_02_0616 -
21246374-21246462,21246605-21247702,21247800-21248110,
21248550-21249251,21252802-21252912,21253396-21253481,
21253753-21253862,21254085-21254236,21254656-21254765
Length = 922
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Frame = -3
Query: 731 PSRWLCGSCLCSAEACVDYA---SCMCCVKALF 642
PS W+C + C A D C CC+ LF
Sbjct: 327 PSTWICKNAACKAVLTADNTFCKRCSCCICHLF 359
>04_04_1070 + 30579263-30579861,30579970-30580095,30580190-30580394
Length = 309
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Frame = +1
Query: 700 HRQEP----HSQREGSGRGRAHCSQRHRPHVSHTI 792
H+++P HS+ +G GR HCS+R + V TI
Sbjct: 175 HKRKPCAGGHSEATANG-GRCHCSKRRKNRVKRTI 208
>03_03_0025 +
13848450-13849420,13850921-13851131,13851327-13851459,
13851576-13851832
Length = 523
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 244 SERGAHVRRRPRATTLHGQAQRSLSPPPRGPK 339
S G+ + RRP+ L Q+ S PPP P+
Sbjct: 119 SSGGSRLARRPKKGILKAQSSSSAPPPPPSPE 150
>04_03_0193 + 12477565-12478229,12478298-12478423,12478508-12478688
Length = 323
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 700 HRQEPHSQREGSGRGRAHCSQRHRPHVSHTI 792
H + + GS GR HCS+R + V TI
Sbjct: 200 HSENVAGGKYGSTGGRCHCSKRRKHRVKRTI 230
>12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406
Length = 351
Score = 27.9 bits (59), Expect = 10.0
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +1
Query: 280 ATTLHGQAQRSLSPPPRGPKPA---ARQ*IFVQRGRAARLGASEGAGGARRD 426
AT ++ + SPPP P PA + + F RAAR SE + GA +
Sbjct: 105 ATARRKRSASARSPPPARPPPATNTSAEERFPASPRAARKDLSEASSGAEEE 156
>06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176
Length = 427
Score = 27.9 bits (59), Expect = 10.0
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 362 NIYWRAAGFGPRGGGLSDRCACPWSVVARGRR 267
N++ + G G GGG + CPW+ G R
Sbjct: 40 NVFDQEVGVGGEGGGGGEGSGCPWARPCDGCR 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,453,028
Number of Sequences: 37544
Number of extensions: 396741
Number of successful extensions: 1582
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1574
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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