Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10d16
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    34   0.021
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.8  
SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex |...    27   3.2  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    27   3.2  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    26   5.5  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    26   5.5  
SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr 1...    26   5.5  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    26   7.3  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   7.3  
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    25   9.6  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.6  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 34.3 bits (75), Expect = 0.021
 Identities = 21/57 (36%), Positives = 26/57 (45%)
 Frame = +3

Query: 420 PLGPRAPRGPLAPVSPLGPSMPGGPCGPLGPRSHRQYPPSNGAVASSTLYA*LPSPP 590
           P  P AP+ P APV P  PS+P  P  P+ P +     P    VA       +P PP
Sbjct: 539 PEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEV--PSVPQPP 593



 Score = 34.3 bits (75), Expect = 0.021
 Identities = 20/59 (33%), Positives = 27/59 (45%)
 Frame = +3

Query: 420 PLGPRAPRGPLAPVSPLGPSMPGGPCGPLGPRSHRQYPPSNGAVASSTLYA*LPSPPSS 596
           P  P  P+ P+APV P  PS+P  P  P+ P       P   AV        +P PP++
Sbjct: 584 PEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEV--PSVPQRPAVPVVPEAPSVPQPPAA 640



 Score = 32.3 bits (70), Expect = 0.084
 Identities = 19/58 (32%), Positives = 25/58 (43%)
 Frame = +3

Query: 420 PLGPRAPRGPLAPVSPLGPSMPGGPCGPLGPRSHRQYPPSNGAVASSTLYA*LPSPPS 593
           P  P  P+ P APV P  PS+P  P  P+ P +     P    V        +P PP+
Sbjct: 629 PEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEV--PSVPQPPA 684



 Score = 31.9 bits (69), Expect = 0.11
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 420 PLGPRAPRGPLAPVSPLGPSMPGGPCGPLGPRSHRQYPP 536
           P  P  P+ P APV P  PS+P  P  P+ P + +   P
Sbjct: 659 PEAPSVPQPPAAPVVPEVPSVPQPPAVPVVPEAGQLNEP 697



 Score = 31.1 bits (67), Expect = 0.19
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +3

Query: 420 PLGPRA---PRGPLAPVSPLGPSMPGGPCGPLGPRSHRQYPPSNGAVA 554
           P+ P A   P+ P+APV+P  PS+P  P  P+ P +     P    VA
Sbjct: 566 PVVPEALSVPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVA 613



 Score = 29.9 bits (64), Expect = 0.45
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +3

Query: 393 SIRSIKSRDP--LGPRAPRGPLAPVSPLGPSMPGGPCGPLGP 512
           S  S K+  P  + P  P+ P APV P  PS+   P  P+ P
Sbjct: 498 SSASQKAAQPSVITPSVPQPPAAPVVPEAPSVHQPPAAPVAP 539


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
 Frame = +3

Query: 429  PRAPRGPLAPVSPLGPSM----PGGPCGPLGPRSHRQYPPSNGAV-ASSTLYA*LPSPPS 593
            P AP   +APV P  P M    P     P  P    Q PP+   V   S + +    PPS
Sbjct: 1448 PPAPMHAVAPVQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQPPS 1507

Query: 594  S 596
            S
Sbjct: 1508 S 1508


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +3

Query: 420 PLGPRAPRGPLAPVSPLGPSMPGGPCGPLGPRSHRQYPPSNGAVASSTLYA*LPSPP 590
           P  PR+      P+ P G S P  P     P + RQ PP    ++SS   +  P+PP
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP----LSSSRAVSNPPAPP 392


>SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 23/81 (28%), Positives = 29/81 (35%)
 Frame = -2

Query: 790 SDGKKCVPRIPLAIAEXLPLVRASSRCYAPCDTVTWLTRKVRQLNDQXXXXXXXXXXXLE 611
           S  +K V  +PL+ +   PLV   S  Y P +T   L +K  Q N              E
Sbjct: 18  SGDEKSVKILPLSESSLPPLVTTISGFYPPENTRFQLLKKSNQSNRDASLIGRTERVQFE 77

Query: 610 HPMLKDDGGEGNYAYRVLDAT 548
                    E NY   V D T
Sbjct: 78  AKNQSTATVEANYCLAVADKT 98


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +2

Query: 443 RSSRSSITFGSLHARRSLWSPRSSLASTIPAF 538
           +SS  S  + S+ +R  L+SPR SL  ++PAF
Sbjct: 385 QSSLLSFEWISIISRALLFSPRPSLLISVPAF 416


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 5/109 (4%)
 Frame = -2

Query: 382 RHDIQNIEARVYKDGEKPERFNLQKAWRRQRKQEKIDRDSRTEQELEAYTAPSVESPVEI 203
           R D    E    K+ E   R NL    R+ RKQEK+    R   EL +    ++ES   +
Sbjct: 265 RRDENTKEIEKLKEKEGSIRRNLLAFDRKVRKQEKLIASKR--PELISIAEKALESKSNL 322

Query: 202 SS-RGRTGEIRHDSTTDWSMVKG-DNDLEDLPLG---LMDDMKALERLR 71
              + +  EI  D +   S ++  +N L  L       + DM+  E+L+
Sbjct: 323 RKIQRKAAEIEKDYSDQASTLQVLENQLTSLSAAEKEFLKDMQEKEQLK 371


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 353 RLQRRRKAGTIQSPKGLAPPTQAGEN*PGQQNRT 252
           ++Q+++KA   QSPK   PP    ++ P Q+  T
Sbjct: 309 QMQQQQKAQQQQSPKAQQPPAHLVQSAPVQRKTT 342


>SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 283

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -3

Query: 330 RNDSISKRLGAANASRRKLTGTAEPNRS*KRTRRHLLKAPLKYLLEVVREKYATI 166
           R   I ++   ++  +RKLT T +   +    R  LLK+P K   + +R + A I
Sbjct: 198 RKKKIRRKPTPSSTKKRKLTRTGQKLGTDMNIRLELLKSPAKPQAQSMRGREARI 252


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
 Frame = -2

Query: 253 QELEAYTAPSVESPVEISSRGRTGEIRHDSTTD--WSMVKGDNDLEDLPLGLMDDMKALE 80
           +++   T+ ++E+PV + +      ++H++ TD   +   G+N L+      +   K  +
Sbjct: 554 KQMNHLTSENIETPVPVPNGNWYNGVKHETATDIFTTCHDGNNSLKSSVWKELLKEKHWK 613

Query: 79  RLRQYHVTGNSSKI 38
           +  +  +TGNS +I
Sbjct: 614 QESKPQLTGNSRQI 627


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 42 LEEFPVTWYCRSLSSAF 92
          +E  PV WYC S S+ F
Sbjct: 1  MESQPVIWYCHSCSNEF 17


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 361 EARVYKDGEKPERFNLQKAWRRQRKQEKIDRDSRTEQ 251
           E RV K+GE+P +    +A    RK+E   R + T +
Sbjct: 510 EGRVIKEGEQPRKMVKARAVTISRKREHEFRVAETNE 546


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +3

Query: 510 PRSHRQYPPSN--GAVASSTLYA*LPSPPSS 596
           P + R+ P  N  G+V  S LY  +PSPPSS
Sbjct: 209 PNTFRRSPLKNDTGSVELSNLY--MPSPPSS 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,002,828
Number of Sequences: 5004
Number of extensions: 58708
Number of successful extensions: 205
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)