Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10d16
(809 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0695 - 19547101-19548010,19548089-19548587,19549461-195497... 39 0.004
10_08_0198 + 15688142-15690427,15690524-15690607,15691232-156913... 34 0.12
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 32 0.47
09_06_0374 + 22649455-22650024,22650085-22650637,22650812-226511... 32 0.62
03_06_0670 + 35434203-35434355,35436601-35436729,35436978-354384... 31 0.82
10_02_0195 + 6578384-6578629,6578710-6579300,6586302-6587512,658... 31 1.1
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575... 31 1.4
02_01_0603 - 4487114-4487365,4487649-4487741,4487948-4488091,448... 30 1.9
04_01_0500 - 6540769-6541482,6541819-6541877,6541965-6542064,654... 30 2.5
09_04_0072 + 14323449-14324274,14324351-14324447,14325175-143252... 29 3.3
07_03_1311 + 25687434-25687884,25689313-25689566,25689632-256902... 29 3.3
06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909 29 3.3
02_01_0377 + 2728892-2729187,2729483-2729544,2730516-2730570,273... 29 3.3
07_03_1003 + 23239829-23240121,23240257-23240349,23240785-232409... 29 4.4
03_06_0648 + 35280492-35280645,35281742-35281820,35282491-352825... 29 4.4
01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815... 29 4.4
09_06_0218 - 21636037-21636900 29 5.8
05_04_0173 + 18724367-18724476,18724570-18724651,18724750-187248... 29 5.8
04_04_1019 + 30166514-30166585,30167207-30167841,30168505-301686... 29 5.8
04_04_0878 + 29039110-29039366,29039634-29039822,29039907-290400... 29 5.8
02_05_0686 - 30900748-30902167,30903442-30904742 29 5.8
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881... 29 5.8
07_01_0479 + 3606663-3607448 28 7.6
03_06_0471 + 34169562-34169892,34170121-34170347 28 7.6
02_01_0302 - 2021221-2023305 28 7.6
01_07_0344 - 42869465-42869502,42869597-42869771,42869923-428701... 28 7.6
>09_04_0695 -
19547101-19548010,19548089-19548587,19549461-19549728,
19551025-19551687,19551849-19552060,19552203-19552593,
19552659-19553107,19553454-19553790
Length = 1242
Score = 39.1 bits (87), Expect = 0.004
Identities = 25/70 (35%), Positives = 33/70 (47%)
Frame = +3
Query: 357 ASMFCMSCLTSASIRSIKSRDPLGPRAPRGPLAPVSPLGPSMPGGPCGPLGPRSHRQYPP 536
A+ F +AS + P+G AP GP+AP+ P+ P GP PLGP P
Sbjct: 482 AAAFHAEKSANASTLEAGASVPIGSAAPLGPVAPIGPVSP----GPVAPLGPDGSAASP- 536
Query: 537 SNGAVASSTL 566
G +AS L
Sbjct: 537 --GLIASPGL 544
>10_08_0198 +
15688142-15690427,15690524-15690607,15691232-15691336,
15691420-15691528,15693037-15693188,15693278-15693583
Length = 1013
Score = 34.3 bits (75), Expect = 0.12
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Frame = +3
Query: 420 PLGPRAPRGPLA----PVSPLGPSMPGGPCGPLGP 512
PL P P GPL P+ P+GP+M P GPLGP
Sbjct: 513 PLMPPPPFGPLGLPPGPMQPIGPNMSHSP-GPLGP 546
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 32.3 bits (70), Expect = 0.47
Identities = 25/62 (40%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +3
Query: 420 PLGPRAPRG--PLAPVSPLGPSMPGGPCGPLG---PRSHRQYPPSNGAVASSTLYA*LPS 584
P P AP G P P P+G + P P PL PRS P + GA+A+ T A P
Sbjct: 282 PPPPNAPMGMPPRIPPPPVGGTQPPPPPPPLANGPPRSIPPPPMTGGAMANFTPGA-PPR 340
Query: 585 PP 590
PP
Sbjct: 341 PP 342
>09_06_0374 +
22649455-22650024,22650085-22650637,22650812-22651147,
22651171-22652605,22652939-22653062
Length = 1005
Score = 31.9 bits (69), Expect = 0.62
Identities = 19/38 (50%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +3
Query: 408 KSRDPLGPRAPRGPLAPVSPLG--PSMPGGPCGPLGPR 515
+ R PLG R P GP P PLG P P P PLG R
Sbjct: 429 RPRKPLGRRPP-GPARPGKPLGRRPPGPARPGKPLGRR 465
>03_06_0670 +
35434203-35434355,35436601-35436729,35436978-35438409,
35438524-35439014
Length = 734
Score = 31.5 bits (68), Expect = 0.82
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = -2
Query: 334 KPERFNLQKAWRRQRKQEKIDRDSRTEQELEAYTAPSVESPVEISSRGR-TGEIRHDSTT 158
KPE N++KA R+ +K+EKI+ + ++ + P + P+ S G T ++ H +
Sbjct: 608 KPEAINIEKAIRQHKKEEKINGNQEGQR---SSVEPRLHDPLVASENGAPTKKLPHPDSK 664
Query: 157 DWSMV 143
S +
Sbjct: 665 YLSQI 669
>10_02_0195 +
6578384-6578629,6578710-6579300,6586302-6587512,
6587593-6587844,6587932-6588042,6588133-6588214,
6588299-6588382,6588464-6588658
Length = 923
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Frame = +3
Query: 420 PLGPRAPRGPLAPVSPLGPSMPGGPCGPLGPRSHRQYPPSNGAVASSTLYA*LPSP-PSS 596
PL P P P P+ + PG P + P PP A S T PSP P S
Sbjct: 448 PLVPITAAPPAPPSPPICTTPPGSPLPQISPVRGPSPPPQQVAPNSPTTLPRQPSPAPQS 507
Query: 597 FSI 605
+ +
Sbjct: 508 YLV 510
>05_07_0112 -
27755604-27756449,27756624-27756887,27757428-27757532,
27757626-27758249,27759048-27759596,27759665-27760372,
27760449-27760658,27761266-27761421,27761524-27761664,
27762015-27762101,27762209-27762309,27763071-27763293,
27763384-27763548,27763621-27763713,27763801-27764292,
27764729-27764805,27765184-27765681,27765818-27766046
Length = 1855
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/46 (28%), Positives = 28/46 (60%)
Frame = -2
Query: 385 VRHDIQNIEARVYKDGEKPERFNLQKAWRRQRKQEKIDRDSRTEQE 248
+ +++ E R+ K+ EK + N ++ + +R+ E+ DR+ R E+E
Sbjct: 439 IAKEVEAHEKRIRKELEKQDMLNRKREEQVRREMERNDRERRKEEE 484
>02_01_0603 -
4487114-4487365,4487649-4487741,4487948-4488091,
4488179-4488265,4489137-4489328
Length = 255
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +1
Query: 433 VRPEVLSLQYHLWVPPCPAVLVVPSVLARID 525
V PEVLS Y LWV P + V +L R+D
Sbjct: 225 VNPEVLSKLYDLWVMPLTKDVEVEYLLRRLD 255
>04_01_0500 -
6540769-6541482,6541819-6541877,6541965-6542064,
6542113-6542322,6542507-6542765,6544022-6544215
Length = 511
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = +3
Query: 399 RSIKSRDPLGPRAPRGPLAPVSPLGPSMPGGPCGPLGPRSHRQYPP 536
R ++ D GP+ RG P PL P P GPL RS PP
Sbjct: 12 RRVEEEDEKGPQGERGAGEPPPPLPPP----PPGPLQRRSSLPPPP 53
>09_04_0072 +
14323449-14324274,14324351-14324447,14325175-14325277,
14325359-14325412,14325495-14325569,14325597-14325650,
14325687-14325755,14325840-14325923,14326115-14326312,
14326428-14326927,14327011-14327140,14328226-14328317,
14328776-14328954,14329114-14329316,14329398-14329499,
14330047-14330209,14330690-14330979,14331088-14331225,
14331311-14331390,14331510-14331606,14331685-14331814,
14331921-14332162
Length = 1301
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +3
Query: 411 SRDPLGPRAPRGPLAPVSPLGPSMPGGP 494
S PL PRA + PLA SP P+ P P
Sbjct: 35 SPSPLNPRATKPPLAVPSPPPPNPPSPP 62
>07_03_1311 +
25687434-25687884,25689313-25689566,25689632-25690252,
25690684-25690836
Length = 492
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = -1
Query: 374 HTEH*GARLQRRRKAGTIQSPKGLAPPTQAGE 279
HTE ARL R R A + GL PP Q E
Sbjct: 26 HTEFNRARLLRSRGAAAVAGADGLPPPGQPAE 57
>06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909
Length = 627
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = +3
Query: 435 APRGPLAPVSPLGPSMPGGPCGPL--GPRSHRQ-YPP 536
+PR P+AP P M P GP+ GP H+ YPP
Sbjct: 159 SPRPPVAPYPPGSMHMMPPPLGPMMRGPPMHQPGYPP 195
>02_01_0377 +
2728892-2729187,2729483-2729544,2730516-2730570,
2730784-2730858,2730980-2731054,2731155-2731202,
2731548-2732357,2732450-2732498,2733157-2733266,
2733381-2733488,2733920-2733980
Length = 582
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +3
Query: 420 PLGPRAPRGPLAPVSPLGPSMPGGPCGPLGPRSHRQY 530
PLGP P P + + P MP P P PR R Y
Sbjct: 528 PLGPFVPAPPEVVMQMMRPVMPMYPPRPPNPRRLRSY 564
>07_03_1003 +
23239829-23240121,23240257-23240349,23240785-23240993,
23241585-23241729,23241809-23241881,23242165-23242311,
23242411-23242536,23242653-23242712
Length = 381
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +2
Query: 419 SFRTTCAPRSSRSSITFGSLHARRSLWSPRSSLASTIPAFQRSRCVK 559
S R AP ++ ++ + + ARR+ W PR+ L+S A R+R ++
Sbjct: 17 SARRGTAPSATAAAASCPASSARRTTWRPRARLSSGNAARARARLLR 63
>03_06_0648 +
35280492-35280645,35281742-35281820,35282491-35282593,
35282695-35282815,35283144-35283232,35283324-35283473,
35285842-35287161
Length = 671
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/62 (29%), Positives = 25/62 (40%)
Frame = +3
Query: 381 LTSASIRSIKSRDPLGPRAPRGPLAPVSPLGPSMPGGPCGPLGPRSHRQYPPSNGAVASS 560
L + I+ I R P P + G P+ PS+P P GP G ++SS
Sbjct: 265 LGDSMIKQILGRFPKKP-SKSGDKDPIGRSSPSVPNPPLGPRGAERSSNLSSQTPVISSS 323
Query: 561 TL 566
L
Sbjct: 324 GL 325
>01_06_0213 +
27580635-27581105,27581206-27581298,27581376-27581540,
27581640-27581862,27582329-27582429,27582666-27582713,
27583086-27583172,27583745-27583879,27583985-27584140,
27585336-27585545,27585641-27586351,27586429-27586974,
27587872-27588495,27588595-27588699,27590460-27590711,
27590939-27591766
Length = 1584
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/48 (25%), Positives = 28/48 (58%)
Frame = -2
Query: 391 ADVRHDIQNIEARVYKDGEKPERFNLQKAWRRQRKQEKIDRDSRTEQE 248
A + +++ E R+ K+ EK + ++ + +++ E+ DR+ R E+E
Sbjct: 162 AKIAKEVEAHERRIRKELEKQDMMKRKREEQMRKEMERHDRERRKEEE 209
>09_06_0218 - 21636037-21636900
Length = 287
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 454 LQYHLWVPPCPAVLVVPSVLARIDNTR 534
LQY +W PP P V+ +P V + R
Sbjct: 15 LQYQMWPPPPPPVMELPVVFVGVKPVR 41
>05_04_0173 +
18724367-18724476,18724570-18724651,18724750-18724840,
18725060-18725172,18725270-18725342,18725445-18725565,
18725665-18725782,18726609-18726748,18726824-18726881,
18727007-18727077,18727181-18727733
Length = 509
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = +3
Query: 426 GPRAPRGPLAPVSPLGPSMP--GGPCGPLGPRSHRQYPPSNGA 548
G PRG + G + P GGP GP GP YP G+
Sbjct: 457 GTGGPRGGVGGGYGGGSNYPQQGGPYGPSGPGRGSNYPQQGGS 499
>04_04_1019 +
30166514-30166585,30167207-30167841,30168505-30168645,
30169604-30170300
Length = 514
Score = 28.7 bits (61), Expect = 5.8
Identities = 19/42 (45%), Positives = 22/42 (52%)
Frame = +3
Query: 411 SRDPLGPRAPRGPLAPVSPLGPSMPGGPCGPLGPRSHRQYPP 536
SR PL PR P+A V G + P PL PR+ R YPP
Sbjct: 158 SRKPLLPRGM--PMAAVG--GLAAPRVMPSPLSPRAIRPYPP 195
>04_04_0878 +
29039110-29039366,29039634-29039822,29039907-29040044,
29040786-29041011,29041686-29041878,29041963-29042123
Length = 387
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +3
Query: 474 PSMPGGPCGPLGPRSHRQYP 533
PS PG P P P SHR P
Sbjct: 162 PSSPGSPYSPSSPSSHRDAP 181
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Frame = +3
Query: 420 PLGPRAP---RGPLAPVSPLGPSMPGGPCGPLGPRSHRQYPPSNGAVA 554
P GP P +GP P P GPS P P P G + PP G +
Sbjct: 341 PKGPPPPPPAKGPPPPPPPKGPSPPPPP-PPGGKKGGPPPPPPKGGAS 387
>02_02_0307 -
8809724-8811589,8811681-8811762,8812130-8812242,
8812361-8812492,8812681-8812864,8813002-8813135,
8813552-8813656,8813738-8813839,8813930-8814022,
8814136-8814456,8814595-8814696,8814791-8814853,
8815213-8815708,8815964-8816124,8816213-8816743,
8817077-8817118,8817203-8817334,8817639-8817703,
8817858-8818169,8818262-8818334,8818425-8818517,
8819440-8819501,8819740-8819809
Length = 1777
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +3
Query: 408 KSRDPLGPRAPRGPLAPVSPLGPSMPGGPCG 500
K P P AP P P SP PG P G
Sbjct: 134 KPASPSSPDAPPPPPPPASPDAAKTPGSPAG 164
>07_01_0479 + 3606663-3607448
Length = 261
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Frame = +3
Query: 429 PRAPRGP---LAPVSPLGPSMPGGPCGPLGPRSHRQYPP 536
P P GP + P P P PG P P GP+ Q PP
Sbjct: 222 PGMPGGPPPGMRPGMPPPPFRPGMPPPPPGPQQPGQNPP 260
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 28.3 bits (60), Expect = 7.6
Identities = 23/61 (37%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = +3
Query: 420 PLGPRAPRGPLAPVSPLG-PSMPGGPCGPLGPRSHRQYPPSNGAVASSTLYA*LPSPPSS 596
PL P P +P G PS P G P G QYPPS G S Y PPS
Sbjct: 30 PLMQGYPNSPGQYPTPGGYPSAPPGQYPPAGGYPGAQYPPS-GYPPSQGGYPPGAYPPSG 88
Query: 597 F 599
+
Sbjct: 89 Y 89
>02_01_0302 - 2021221-2023305
Length = 694
Score = 28.3 bits (60), Expect = 7.6
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = +3
Query: 429 PRAPRGPLAPVSPLGPSMPGGPCGPL--GPRSHRQYPPSNGAVASSTLYA*LPSPPSSFS 602
P P P + +P S P G P P S PPS+ S+ + PSPP +++
Sbjct: 492 PSYPSPPSSSTTPSYHSPPQGHTTPSHPSPPSSSTAPPSHSPPQSTPTHPSYPSPPVTYT 551
>01_07_0344 -
42869465-42869502,42869597-42869771,42869923-42870117,
42870678-42870788,42870899-42871111,42871551-42871658,
42871732-42871873,42872150-42873449,42874032-42874085,
42874491-42874923
Length = 922
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/26 (61%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = +3
Query: 462 SPLGPSMPGGPCGPL--GPRSHRQYP 533
SP+ PS PGGP PL G RS R YP
Sbjct: 518 SPILPSSPGGPGSPLRHGDRSMR-YP 542
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,623,592
Number of Sequences: 37544
Number of extensions: 468424
Number of successful extensions: 1828
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1811
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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