Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10d15
(839 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976... 32 0.65
03_02_0686 + 10407800-10409501,10409611-10410284 31 1.1
08_02_1147 - 24688686-24689729,24689875-24690036,24690339-246903... 30 2.6
12_01_0015 - 111666-111747,112043-112368,112500-112635,112772-11... 29 4.6
11_04_0216 - 14954047-14956098 29 4.6
11_01_0532 + 4201374-4201401,4201475-4202652,4204316-4204670,420... 29 4.6
11_01_0015 - 115965-116076,116432-116757,116889-117024,117161-11... 29 4.6
07_01_1016 + 8641370-8641393,8642676-8643012,8643292-8643326 29 4.6
05_02_0104 - 6638018-6638599,6639284-6639632,6641843-6642048 29 4.6
05_05_0015 + 21530547-21531047 29 6.1
04_04_1233 + 31966790-31967095,31967212-31967289,31967335-319673... 29 6.1
02_04_0562 - 23886272-23886357,23886456-23886571,23887045-238871... 29 6.1
09_04_0338 - 16801189-16801524,16801605-16801679,16801758-168018... 28 8.1
02_01_0347 - 2493570-2493572,2493626-2493853 28 8.1
>06_03_0912 + 25896152-25896451,25896528-25897296,25897492-25897658,
25898932-25901013,25901155-25901730,25904503-25905648,
25907056-25908693
Length = 2225
Score = 31.9 bits (69), Expect = 0.65
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = -1
Query: 278 IDKVIDSCPAFKEPECICHEESLSSLSSNATWDIEYTP 165
IDK +DSCP P+CI +SL L DIE P
Sbjct: 2111 IDKCVDSCPV---PKCILGWKSLQKLEIRRCEDIELLP 2145
>03_02_0686 + 10407800-10409501,10409611-10410284
Length = 791
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -2
Query: 835 QAVHVFKTRFTGA-SPKWGGCGMRQTLLERSRDVDGSL-GSLVKALR 701
+ V++F RF GA P+ GGC + QTL + G++ SL A R
Sbjct: 112 RGVYLFNNRFAGAVPPQLGGCALLQTLDLSGNFLSGAVPASLANATR 158
>08_02_1147 -
24688686-24689729,24689875-24690036,24690339-24690368,
24690713-24690860,24691302-24691489
Length = 523
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -1
Query: 422 EEQAKVEARKMVKLKKQRDAEIRKALAEAVED 327
EE+ K E RK+ +LKKQ+D E KA +++
Sbjct: 26 EEKEKEEQRKIQELKKQQDEEREKAAFRKLQE 57
>12_01_0015 -
111666-111747,112043-112368,112500-112635,112772-112955,
113067-113135,113703-113829,115810-116051,116125-116279,
116751-116822,116908-116976,117058-117129,117217-117349,
117439-117944,118033-118567,118753-118819
Length = 924
Score = 29.1 bits (62), Expect = 4.6
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +2
Query: 53 FLSTLEHQRFQRRLVYTASPRVYTFFFSLAPN---RNSQKVGYTQCPKSRYWTMNLV 214
F+STLE ++F L YT + + S N ++ V Y P R W +LV
Sbjct: 160 FISTLELRQFNGSLYYTTDEKQFFLRLSARINFGAESNASVRYPDDPFDRIWESDLV 216
>11_04_0216 - 14954047-14956098
Length = 683
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/52 (25%), Positives = 27/52 (51%)
Frame = -1
Query: 482 EDPYVDCDPLVFKIIKKRSPEEQAKVEARKMVKLKKQRDAEIRKALAEAVED 327
E+ ++CDP+ +I K P + +R++++ + Q +K L E E+
Sbjct: 263 EEKRLECDPVSVEIKKCEPPAKSLSSVSRRILQWEAQASGNFKKVLDEMEEN 314
>11_01_0532 +
4201374-4201401,4201475-4202652,4204316-4204670,
4204791-4204864,4206965-4207056,4207500-4207573,
4207680-4207822,4207889-4207909
Length = 654
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -1
Query: 287 LTAIDKVIDSCPAFKEPECICHEESLSSLSSNA 189
LTA K ID F P+C E +SSL+SN+
Sbjct: 328 LTAPLKSIDGLILFDRPKCNLQAEDISSLASNS 360
>11_01_0015 -
115965-116076,116432-116757,116889-117024,117161-117344,
117455-117523,118091-118217,120028-120269,120343-120497,
120969-121040,121126-121194,121276-121347,121435-121567,
121661-122166,122255-122789,122943-123018
Length = 937
Score = 29.1 bits (62), Expect = 4.6
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +2
Query: 53 FLSTLEHQRFQRRLVYTASPRVYTFFFSLAPN---RNSQKVGYTQCPKSRYWTMNLV 214
F+STLE ++F L YT + + S N ++ V Y P R W +LV
Sbjct: 163 FISTLELRQFNGSLYYTTDEKQFFLRLSARINFGAESNASVRYPDDPFDRIWESDLV 219
>07_01_1016 + 8641370-8641393,8642676-8643012,8643292-8643326
Length = 131
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 432 AQPRGASESGSTEDGQAEEAARRRNPKGPGR 340
A G G E+G+ EEAA R P+G R
Sbjct: 60 AAEAGGGGVGEAEEGEEEEAAETRGPRGCAR 90
>05_02_0104 - 6638018-6638599,6639284-6639632,6641843-6642048
Length = 378
Score = 29.1 bits (62), Expect = 4.6
Identities = 17/36 (47%), Positives = 18/36 (50%)
Frame = -3
Query: 435 EAQPRGASESGSTEDGQAEEAARRRNPKGPGRSRRR 328
EA GA+ SGS A RR P PGR RRR
Sbjct: 344 EAASLGAAGSGSPRPDPTPAAGPRRRP-APGRRRRR 378
>05_05_0015 + 21530547-21531047
Length = 166
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/21 (52%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
Frame = -2
Query: 448 LRLSRSAAPR-SKRKWKHGRW 389
LR++ +AAP+ S R+W+ GRW
Sbjct: 87 LRMAVAAAPKTSHRRWRQGRW 107
>04_04_1233 +
31966790-31967095,31967212-31967289,31967335-31967355,
31967390-31967557
Length = 190
Score = 28.7 bits (61), Expect = 6.1
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +1
Query: 115 CIHILLFLGAKSKQPKGGVYSMSQVALLDNELSDSSWHIHSGSLKAGQLSITLSMAVRSL 294
CIH F+ A S+QP V + + +DN +D S + + K G + LSM + L
Sbjct: 133 CIHAKYFVDASSRQPAAEV--LQETVSVDNN-NDKSLYECNELRKKGLCLVPLSMLINYL 189
>02_04_0562 -
23886272-23886357,23886456-23886571,23887045-23887127,
23887683-23887829,23887946-23887993,23888166-23888384,
23889370-23889541,23889636-23889700,23890386-23890512,
23891358-23891450,23891520-23891629,23891722-23891868,
23892161-23892473,23892580-23893178
Length = 774
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -1
Query: 437 KKRSPEEQAKVEARKMVKLKKQRDAEIRKALAE 339
KK+ EE+AK E + KLK+ + AE AL E
Sbjct: 546 KKKEKEEKAKQEKEEKAKLKEPKAAEEDLALKE 578
>09_04_0338 -
16801189-16801524,16801605-16801679,16801758-16801831,
16801972-16802059,16802185-16802336,16802423-16802582,
16802913-16803128,16803487-16803744,16804202-16804231,
16804738-16804941,16805790-16805855
Length = 552
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = -1
Query: 437 KKRSPEEQAKVEARKMVKLKKQRDAEIRKALAEAVEDICKCAYMD 303
++RS ++ E ++ KLK +R EI +E+IC+ A+++
Sbjct: 251 EQRSRIDKMGAEVERLTKLKARRLKEIFMKKRSELEEICRSAHIE 295
>02_01_0347 - 2493570-2493572,2493626-2493853
Length = 76
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 411 ESGSTEDGQAEEAARRRNPKGPGRSRRRHLQMCLYGC 301
E G E + E+A RRR G S+RR + ++GC
Sbjct: 28 EEGGEERCEEEKAERRRGGGGERASKRRCICTRMWGC 64
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,282,627
Number of Sequences: 37544
Number of extensions: 458187
Number of successful extensions: 1702
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1701
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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