Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10d13
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    29   0.63 
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    29   0.84 
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    28   1.5  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    27   2.6  
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom...    27   2.6  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    27   3.4  
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   3.4  
SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c...    26   5.9  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    26   5.9  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   5.9  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   5.9  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    26   7.8  

>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 19/83 (22%), Positives = 38/83 (45%)
 Frame = +2

Query: 281 QHAVHEVGVDSESVGAEQLSQALRRHRPGAELVGVHEPLPQPGAVVPQATGQLRKH*RPN 460
           +HA+    + SE+  A + S  + RHRP  +   V E   +  + +  ++   +K    +
Sbjct: 240 KHALPPSYISSEAAQASRSSFQVERHRPTPDNSAVIEAARRTYSSISSSSSPFKKK-TQS 298

Query: 461 HFTSRAFLFPWITSKMSNQSQKL 529
           H  +R    P I+ ++S  S  +
Sbjct: 299 HLPNRTTEVPSISKQLSKSSTSI 321


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 769 ISADEYALRYLELHSDEYPMANIALIMDKIRR 674
           I  D+Y  RYL+   DE P  N +L   +IR+
Sbjct: 470 ICKDQYGCRYLQKLLDENPKVNASLFFPEIRQ 501


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
 Frame = -1

Query: 277 VLEKDENCNIY---YEDLLKFL--DFQTRPVFNLTE---DDYQKVVRHAPPLKDTECKLW 122
           +LEK    N+    Y  LLK L  DF  R  F  T    +DY+  V+H   L    C+L+
Sbjct: 480 LLEKTSVINLIMALYVKLLKSLARDFPARSPFEATSQKTNDYELEVQH---LFTWTCELY 536

Query: 121 AENENLIQEGYVNWNA 74
           +EN N +   ++  N+
Sbjct: 537 SENFNTVISSFIIANS 552


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +3

Query: 669 KNLRILSIIKAMFAIGYSSECNSKYRKAYSSAEMRRKRCLLMTSSFPTHMSLSVYAG 839
           KN+R L I+  +  +G+ +       KA           L++  +FP  ++L VY G
Sbjct: 277 KNMRQLLIVHTLGKVGFVANETLTLLKATEFGLSNEMLSLIILINFPLGLALGVYTG 333


>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 16/50 (32%), Positives = 20/50 (40%)
 Frame = +2

Query: 323 GAEQLSQALRRHRPGAELVGVHEPLPQPGAVVPQATGQLRKH*RPNHFTS 472
           G   LSQ  R H+PG   +  H   P+P    P+    L K   P    S
Sbjct: 307 GQGMLSQ--RHHQPGNLYIRFHVDFPEPNFATPEQLALLEKALPPRKIES 354


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 379 DELGTGAVAPERLRQLLRAHRLTINTDLMDCMLQVLEKDE 260
           +ELG  +VA E    +L  H   I+  +  C+LQ+   +E
Sbjct: 525 EELGNTSVASEAYVSILEKHPSFIDARIRKCLLQLSNPNE 564


>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 488

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 355 APERLRQLLRAHRLTINTDLMDCMLQV 275
           +PE L +L++  +L IN D  D +LQ+
Sbjct: 199 SPEYLEELIKDDKLVINGDNKDILLQI 225


>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 16/69 (23%), Positives = 31/69 (44%)
 Frame = +3

Query: 435 NSVNTNDLIISRRGLFSFPGSPRKCLTKVKNSCCVIFSHIISFRACLKHRTLISSLLFGK 614
           +++N N  IIS RG     GSP +   K+ +   +   +++    C K + ++     G 
Sbjct: 114 SALNMNVFIISYRGYGKSTGSPSEAGLKIDSQTAL--EYLMEHPICSKTKIVVYGQSIGG 171

Query: 615 TASMYLATK 641
             ++ L  K
Sbjct: 172 AVAIALTAK 180


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 316 LTINTDLMDCMLQVLEKDENCNIYYEDLL 230
           +T+  DLMD M + LE+D+   +   +LL
Sbjct: 570 VTVGPDLMDVMKRCLERDQRKRLTIPELL 598


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 139  TECKLWAENENLIQEGYVNWN 77
            ++C+ WA   NLI   Y  WN
Sbjct: 1848 SDCRSWARKANLISLVYYAWN 1868


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 139  TECKLWAENENLIQEGYVNWN 77
            ++C+ WA   NLI   Y  WN
Sbjct: 1848 SDCRSWARKANLISLVYYAWN 1868


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 21/74 (28%), Positives = 36/74 (48%)
 Frame = -1

Query: 835 AYTDKDMWVGNELVINKHRFRLISADEYALRYLELHSDEYPMANIALIMDKIRRFLASQE 656
           A  DK+  VGN   +   + R  S++ Y      LHSD   ++N     +++RR L +Q+
Sbjct: 56  ASLDKESTVGN---LENQKNRSYSSEIY------LHSDTNFLSNFDSAYERVRRLL-NQQ 105

Query: 655 NGYKNFVAKYMEAV 614
            G  +   K +E +
Sbjct: 106 GGKSSLQKKEVEQI 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,558,820
Number of Sequences: 5004
Number of extensions: 75906
Number of successful extensions: 252
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)