Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10d13
         (853 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1351 - 32827136-32827984                                         36   0.054
05_05_0154 - 22774503-22774652,22774738-22774968,22775508-227756...    31   1.2  
01_06_1236 + 35613123-35613816,35615809-35615952,35616032-356161...    31   1.5  
01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,747...    30   2.0  
08_01_1010 - 10215625-10216335,10216372-10216473                       30   2.7  
06_01_1099 - 9030165-9030605                                           30   2.7  
05_07_0350 - 29457444-29457871,29458786-29461456                       30   2.7  
06_01_0817 - 6185881-6187074                                           29   4.7  
01_05_0049 + 17577358-17577993                                         29   4.7  

>04_04_1351 - 32827136-32827984
          Length = 282

 Score = 35.5 bits (78), Expect = 0.054
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -2

Query: 432 PVACGTTAPGCGRGSCTPTSSAPGRWR-RSACDSCSAPTDSLSTPTSWTAC 283
           PV  G    G G G  +P+ S P R   R AC     PT S  TP+S   C
Sbjct: 153 PVVGGIIGGGSGGGGYSPSPSPPKRHGGRKACPPSPTPTPSTPTPSSSDTC 203


>05_05_0154 -
           22774503-22774652,22774738-22774968,22775508-22775675,
           22775760-22775936,22776281-22776302,22776351-22776417,
           22776583-22776774,22776819-22776962,22778421-22779102
          Length = 610

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = -1

Query: 403 LREGLVHADELGTGAVAPERLRQLLRAHRLTINTDLMDCMLQVLEKDENCNIYYEDLLKF 224
           LR   +  D+ G G + PE L++ L     T   +++  +LQ ++ D++  I YE+ +  
Sbjct: 514 LRRAFLFFDKDGNGYIEPEELQEALVEDGATDIMEVVKDILQEVDTDKDGKISYEEFVAM 573

Query: 223 L 221
           +
Sbjct: 574 M 574


>01_06_1236 +
           35613123-35613816,35615809-35615952,35616032-35616184,
           35616572-35616687,35616800-35616967,35617647-35617707,
           35617772-35617824,35618278-35618508,35618600-35618749
          Length = 589

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/61 (24%), Positives = 33/61 (54%)
 Frame = -1

Query: 403 LREGLVHADELGTGAVAPERLRQLLRAHRLTINTDLMDCMLQVLEKDENCNIYYEDLLKF 224
           LR   +  D+ G G + PE LR+ L       + ++++ +LQ ++ D++  I Y++ +  
Sbjct: 493 LRRAFLFFDKDGNGYIEPEELREALVDDGAGDSMEVVNDILQEVDTDKDGKISYDEFVAM 552

Query: 223 L 221
           +
Sbjct: 553 M 553


>01_01_0953 -
           7472173-7472178,7472216-7472311,7472370-7472462,
           7472855-7473019,7473689-7474821,7474902-7475426,
           7477077-7477249,7478737-7478831,7478893-7481688
          Length = 1693

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -1

Query: 748 LRYLELHSDEYPMANIALIMDKIRRFLASQENGYKNFVAKYMEAVL 611
           LR+L+   D+ P A    ++  + RFL  + N   ++ A ++E +L
Sbjct: 489 LRFLKEFKDQIPKATALALLPSVIRFLIHESNVVHSYAATFIENLL 534


>08_01_1010 - 10215625-10216335,10216372-10216473
          Length = 270

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 348 SACDSCSAPTDSLSTPTSWTACC 280
           S+C SCSA  DS S+  S   CC
Sbjct: 6   SSCASCSAAADSFSSSASSCCCC 28


>06_01_1099 - 9030165-9030605
          Length = 146

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +2

Query: 281 QHAVHEVGV-DSESVGAEQLSQALRRHRPGAELVGVHEPLPQPGAVVPQATG 433
           +H V  VGV   +      L Q + R RP  E++  HE +  PG   P   G
Sbjct: 20  RHYVDHVGVIGGDGACVTNLQQQVSRVRPSGEVMHQHEVMRLPGGGHPDGAG 71


>05_07_0350 - 29457444-29457871,29458786-29461456
          Length = 1032

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -2

Query: 429 VACGTTAPGCGRGSCTPTSSAPGR 358
           V CGT APG   G+ TP S   GR
Sbjct: 629 VLCGTPAPGPAPGTTTPGSGGDGR 652


>06_01_0817 - 6185881-6187074
          Length = 397

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -2

Query: 390 SCTPTSSAPGRWRRSACDSCSAPTDSLSTPTSWTA 286
           SC P  SA        C SC APT +   P  W+A
Sbjct: 15  SCPPPGSAAHAGHAPLCRSCGAPT-TTPVPPPWSA 48


>01_05_0049 + 17577358-17577993
          Length = 211

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = -1

Query: 418 DDRARLREGLVHADELGTGAVAPERLRQLLRAHRLTINTDLMDCMLQVLEKDENCNIYYE 239
           D    LRE     D  G G++    L  LLR+  L  +TD +D ++Q  + + N  I + 
Sbjct: 60  DQLGELREIFRSFDRNGDGSLTQLELGSLLRSLGLKPSTDELDSLIQRADTNSNGLIEFS 119

Query: 238 DLL 230
           + +
Sbjct: 120 EFV 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,256,554
Number of Sequences: 37544
Number of extensions: 494754
Number of successful extensions: 1611
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1611
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)