Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10d13
         (853 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021503-4|CAA16418.1|  352|Caenorhabditis elegans Hypothetical ...    33   0.34 
Z81583-5|CAB04673.1|  574|Caenorhabditis elegans Hypothetical pr...    31   1.4  
Z81137-2|CAB03465.1|  386|Caenorhabditis elegans Hypothetical pr...    31   1.4  
Z83240-2|CAB05814.2|  360|Caenorhabditis elegans Hypothetical pr...    30   2.4  
AF067608-6|AAC17648.2|  194|Caenorhabditis elegans Hypothetical ...    30   2.4  
U00064-5|AAN84796.1|  237|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z83127-1|CAB05630.1|  160|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z81556-1|CAB04524.1|  965|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z81522-6|CAB04230.1|  277|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z77653-1|CAB01124.1|  218|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z66519-10|CAD59139.1|  446|Caenorhabditis elegans Hypothetical p...    28   7.3  
X04259-1|CAA27814.1|  161|Caenorhabditis elegans cal-1 protein.        28   7.3  
Z67884-1|CAA91807.1|  347|Caenorhabditis elegans Hypothetical pr...    28   9.7  
Z48585-7|CAA88482.1|  160|Caenorhabditis elegans Hypothetical pr...    28   9.7  
AB079299-1|BAB84566.1|  160|Caenorhabditis elegans troponin C pr...    28   9.7  

>AL021503-4|CAA16418.1|  352|Caenorhabditis elegans Hypothetical
           protein Y68A4A.7 protein.
          Length = 352

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 14/29 (48%), Positives = 22/29 (75%), Gaps = 2/29 (6%)
 Frame = +3

Query: 741 YRKA--YSSAEMRRKRCLLMTSSFPTHMS 821
           YRKA  +  +E+++KRCLL  SSFP +++
Sbjct: 317 YRKAIGHMFSELKKKRCLLQVSSFPVNLT 345


>Z81583-5|CAB04673.1|  574|Caenorhabditis elegans Hypothetical
           protein T02G6.5 protein.
          Length = 574

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 23/76 (30%), Positives = 37/76 (48%)
 Frame = +2

Query: 560 LQSLLETSDAHKFLIIW*NSFHVFSHKVFITIFLRRQKPSNLVHNQSYVRHRILVRMQF* 739
           +  +L  S   +FL I   +     HK+++ IF   +KP NL HN  Y  +R +V +Q  
Sbjct: 195 MDEVLSNSLLDEFLDILFRTLCHLQHKLWVKIFRLYKKPFNL-HNLPYPAYRKIV-LQMD 252

Query: 740 ISQSVFVSGNETKTML 787
           I   + +S   + T L
Sbjct: 253 ICDMLQLSRTSSNTCL 268


>Z81137-2|CAB03465.1|  386|Caenorhabditis elegans Hypothetical
           protein W02D9.3 protein.
          Length = 386

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -1

Query: 763 ADEYALRYLELHSDEYPMANIALIMDKIR-RFLASQENGYKN 641
           ADE  ++YLEL  +EY   +      K R +FL+SQ NG KN
Sbjct: 178 ADEEKVKYLEL-MEEYKKTDSHKEFQKKRAKFLSSQSNGSKN 218


>Z83240-2|CAB05814.2|  360|Caenorhabditis elegans Hypothetical
           protein T23H4.3 protein.
          Length = 360

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 342 CDSCSAPTDSLSTPTSWTACCKYWKRTKTV 253
           C SCSAPT + +T +   +    W+R K++
Sbjct: 329 CSSCSAPTSTTTTTSGTPSDGSLWQRIKSI 358


>AF067608-6|AAC17648.2|  194|Caenorhabditis elegans Hypothetical
           protein B0511.9a protein.
          Length = 194

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = -2

Query: 408 PGCGRGSCTPTSSAPGRWRRSACDSCSAPTDSLSTPTS 295
           PG   G CT TS AP     SA    +APT +LSTP +
Sbjct: 74  PGPSTGECTRTSIAP--TLTSARTPVAAPTLTLSTPVN 109


>U00064-5|AAN84796.1|  237|Caenorhabditis elegans Hypothetical
           protein ZC155.5b protein.
          Length = 237

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = -2

Query: 417 TTAPGCGRGSCTPTSSAPGRWRRSACDSCSAPTDSLSTPTSW-TACCKYWKRTKTVTFTM 241
           TT    G   C  T    G W R   D+CS+P   L+   SW T  C  W    T  + M
Sbjct: 45  TTITSTGHPRCRLTLHKSG-WDR---DTCSSPQFKLNDTLSWSTRVCYKWV-CDTTKYAM 99

Query: 240 KIC*SFWI 217
           ++  S WI
Sbjct: 100 RV-ESCWI 106


>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical protein
            T25C12.3 protein.
          Length = 2103

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +2

Query: 371  ELVGVHEPLPQPGAVVPQATGQLRKH*RPNHFTSRAFLFPWITSKMSNQSQKLVLCH 541
            ELV +++P  +    V   +G    H + N FT  A    W+ +     +QK  L H
Sbjct: 1105 ELVAINDPETKLNQYVAACSGSFWNHRQQNCFTFTADKLSWLDTWDMCHAQKAYLLH 1161


>Z83127-1|CAB05630.1|  160|Caenorhabditis elegans Hypothetical
           protein T23F6.1 protein.
          Length = 160

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -2

Query: 423 CGTTAPG-CGRGSCTPTSSAPGRWRRSACDSCSAPTDSLSTPTSWTACCK 277
           CG  + G CG+ +C P++  P       C  C   T  +  P + T CCK
Sbjct: 66  CGCGSMGMCGQ-TCCPSAPPPCSCGTPGCMQCVQQT--VLVPVTTTTCCK 112


>Z81556-1|CAB04524.1|  965|Caenorhabditis elegans Hypothetical
           protein F58G1.1 protein.
          Length = 965

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 19/65 (29%), Positives = 27/65 (41%)
 Frame = -1

Query: 292 DCMLQVLEKDENCNIYYEDLLKFLDFQTRPVFNLTEDDYQKVVRHAPPLKDTECKLWAEN 113
           D  L V ++  N N Y  +LLK    Q   +  LT    QK  + +  L D   +L    
Sbjct: 404 DTNLIVSKERGNINFYPMELLKISSHQRVQIPQLTSAQSQKTTKESAVLPDVRQRLILTG 463

Query: 112 ENLIQ 98
           +N  Q
Sbjct: 464 KNAAQ 468


>Z81522-6|CAB04230.1|  277|Caenorhabditis elegans Hypothetical
           protein F32B4.5 protein.
          Length = 277

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 99  WMRFSFSAHNLHSVSFSGGACLTTF**SSSVRLNTGRV 212
           W R +  A  L  +SF   AC +T   S    L+TGR+
Sbjct: 125 WARLAVEAKRLGLISFVEAACPSTISISCHAALSTGRI 162


>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical protein
            T25C12.3 protein.
          Length = 2103

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +2

Query: 371  ELVGVHEPLPQPGAVVPQATGQLRKH*RPNHFTSRAFLFPWITSKMSNQSQKLVLCH 541
            ELV +++P  +    V   +G    H + N FT  A    W+ +     +QK  L H
Sbjct: 1105 ELVAINDPETKLNQYVAACSGSFWNHRQQNCFTFTADKLSWLDTWDMCHAQKAYLLH 1161


>Z77653-1|CAB01124.1|  218|Caenorhabditis elegans Hypothetical
           protein C13C12.1 protein.
          Length = 218

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/68 (22%), Positives = 32/68 (47%)
 Frame = -1

Query: 415 DRARLREGLVHADELGTGAVAPERLRQLLRAHRLTINTDLMDCMLQVLEKDENCNIYYED 236
           D   +RE     D+ G G +  +  R  +    +  + + +D M++ ++ D +  I YE+
Sbjct: 151 DSEMIREAFRVFDKDGNGVITAQEFRYFMVHMGMQFSEEEVDEMIKEVDVDGDGEIDYEE 210

Query: 235 LLKFLDFQ 212
            +K +  Q
Sbjct: 211 FVKMMSNQ 218


>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical protein
            T25C12.3 protein.
          Length = 2103

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +2

Query: 371  ELVGVHEPLPQPGAVVPQATGQLRKH*RPNHFTSRAFLFPWITSKMSNQSQKLVLCH 541
            ELV +++P  +    V   +G    H + N FT  A    W+ +     +QK  L H
Sbjct: 1105 ELVAINDPETKLNQYVAACSGSFWNHRQQNCFTFTADKLSWLDTWDMCHAQKAYLLH 1161


>Z66519-10|CAD59139.1|  446|Caenorhabditis elegans Hypothetical
           protein B0334.11b protein.
          Length = 446

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
 Frame = +2

Query: 134 LSIFQRWRVPDDLLIIILRQIEHWSSLE------IQKLQQIFIVNVTVFVLFQYLQHAVH 295
           LS+  + + PD  L +ILRQ+ H + ++      I+K  QI I   ++ VL +YL++   
Sbjct: 50  LSVRNQVQKPDQSLRLILRQLLHETKIDYHLEGSIKKDVQIKISRHSMSVLSKYLKNDEA 109

Query: 296 EVGVDSESV 322
           ++  + E+V
Sbjct: 110 DLAEEREAV 118


>X04259-1|CAA27814.1|  161|Caenorhabditis elegans cal-1 protein.
          Length = 161

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/68 (22%), Positives = 32/68 (47%)
 Frame = -1

Query: 415 DRARLREGLVHADELGTGAVAPERLRQLLRAHRLTINTDLMDCMLQVLEKDENCNIYYED 236
           D   +RE     D+ G G +  +  R  +    +  + + +D M++ ++ D +  I YE+
Sbjct: 94  DSEMIREAFRVFDKDGNGVITAQEFRYFMVHMGMQFSEEEVDEMIKEVDVDGDGEIDYEE 153

Query: 235 LLKFLDFQ 212
            +K +  Q
Sbjct: 154 FVKMMSNQ 161


>Z67884-1|CAA91807.1|  347|Caenorhabditis elegans Hypothetical
           protein T14G8.2 protein.
          Length = 347

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +2

Query: 467 TSRAFLFP--WITSKMSNQSQKLVLCHFFAHYFLQSLLET 580
           T +A +F   W T   +++   + L HFF ++F+++ LET
Sbjct: 88  TEKAHVFKNTWWTHSKNHRDIVVQLVHFFQNFFMRAKLET 127


>Z48585-7|CAA88482.1|  160|Caenorhabditis elegans Hypothetical
           protein ZK673.7 protein.
          Length = 160

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/61 (22%), Positives = 32/61 (52%)
 Frame = -1

Query: 403 LREGLVHADELGTGAVAPERLRQLLRAHRLTINTDLMDCMLQVLEKDENCNIYYEDLLKF 224
           LRE     D+ G G +    LR +LRA    ++ + +D M+  ++ D +  + +++ ++ 
Sbjct: 97  LREAFRLYDKEGNGYINVSDLRDILRALDDNVSEEELDEMIAEIDADGSGTVDFDEFMEM 156

Query: 223 L 221
           +
Sbjct: 157 M 157


>AB079299-1|BAB84566.1|  160|Caenorhabditis elegans troponin C
           protein.
          Length = 160

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/61 (22%), Positives = 32/61 (52%)
 Frame = -1

Query: 403 LREGLVHADELGTGAVAPERLRQLLRAHRLTINTDLMDCMLQVLEKDENCNIYYEDLLKF 224
           LRE     D+ G G +    LR +LRA    ++ + +D M+  ++ D +  + +++ ++ 
Sbjct: 97  LREAFRLYDKEGNGYINVSDLRDILRALDDNVSEEELDEMIAEIDADGSGTVDFDEFMEM 156

Query: 223 L 221
           +
Sbjct: 157 M 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,957,776
Number of Sequences: 27780
Number of extensions: 439340
Number of successful extensions: 1500
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1490
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)