Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10d08
         (420 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    77   4e-15
U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    75   3e-14
Z70752-5|CAA94758.1|  901|Caenorhabditis elegans Hypothetical pr...    32   0.19 
Z70750-16|CAA94750.1|  901|Caenorhabditis elegans Hypothetical p...    32   0.19 
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z83228-10|CAB05732.2|  585|Caenorhabditis elegans Hypothetical p...    27   5.5  
Z83228-1|CAC70093.1|  568|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AF110415-1|AAF21932.1|  568|Caenorhabditis elegans organic catio...    27   5.5  
AF106589-3|AAT81179.1|  511|Caenorhabditis elegans Hypothetical ...    27   5.5  
AC024882-7|AAF60924.1|  285|Caenorhabditis elegans Hypothetical ...    27   5.5  
U53153-9|AAC69041.1|  511|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z75712-1|CAB00040.1|  724|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z22179-9|CAD90178.1|  428|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z22179-8|CAA80170.2|  431|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z22179-7|CAA80167.2|  429|Caenorhabditis elegans Hypothetical pr...    26   9.5  
U40802-4|AAK19010.1|   80|Caenorhabditis elegans Hypothetical pr...    26   9.5  
AL032644-4|CAA21665.1|  490|Caenorhabditis elegans Hypothetical ...    26   9.5  
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    26   9.5  

>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 77.4 bits (182), Expect = 4e-15
 Identities = 48/112 (42%), Positives = 57/112 (50%)
 Frame = -1

Query: 375 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 196
           MRYV+AYLLAVLGG   P   D++ ILS+VG++ADAE  K V++ L GK VE+LIA G  
Sbjct: 1   MRYVSAYLLAVLGGNANPKVDDLKNILSAVGVDADAETAKLVVSRLAGKTVEELIAEGSA 60

Query: 195 KLSSMPVGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMGFGLFD 40
            L S  V GG                                  DMGFGLFD
Sbjct: 61  GLVS--VSGGAAPAAAAAPAAGGAAPAADSKPAKKEEPKEESDDDMGFGLFD 110


>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 74.5 bits (175), Expect = 3e-14
 Identities = 33/69 (47%), Positives = 47/69 (68%)
 Frame = -1

Query: 375 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 196
           M+Y+ AYLLA LGG  +P+A DV K+L + G++ D E    V+  L GK + ++IA G+ 
Sbjct: 1   MKYLGAYLLATLGGNASPSAQDVLKVLEAGGLDCDMENANSVVDALKGKTISEVIAQGKV 60

Query: 195 KLSSMPVGG 169
           KLSS+P GG
Sbjct: 61  KLSSVPSGG 69


>Z70752-5|CAA94758.1|  901|Caenorhabditis elegans Hypothetical
           protein F25B3.1 protein.
          Length = 901

 Score = 31.9 bits (69), Expect = 0.19
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = -1

Query: 330 TTPAAADVEKILSSVGIEADAEKLKKVITEL-NGKDVEQLI 211
           +TPA+A   +I  + GI    EK+  +ITE+ N KD+E+ +
Sbjct: 444 STPASASDHRISRTFGINESEEKVVAMITEIRNQKDLEEAV 484


>Z70750-16|CAA94750.1|  901|Caenorhabditis elegans Hypothetical
           protein F25B3.1 protein.
          Length = 901

 Score = 31.9 bits (69), Expect = 0.19
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = -1

Query: 330 TTPAAADVEKILSSVGIEADAEKLKKVITEL-NGKDVEQLI 211
           +TPA+A   +I  + GI    EK+  +ITE+ N KD+E+ +
Sbjct: 444 STPASASDHRISRTFGINESEEKVVAMITEIRNQKDLEEAV 484


>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical protein
            K10C2.1 protein.
          Length = 2314

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = +2

Query: 215  SCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTASKYAAT*RIF*VLI 391
            S +T+ P   ++T +  S   S PT   + ST+ AA V+    T+S  + +  +F VLI
Sbjct: 2254 SVATAGPTGPILTVVPVS---SAPTSGAVSSTATAAPVITTTKTSSVLSVSFSMFIVLI 2309


>Z83228-10|CAB05732.2|  585|Caenorhabditis elegans Hypothetical
           protein F52F12.1a protein.
          Length = 585

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
 Frame = -1

Query: 291 SVGIEADAEKLKKVITELNGK---DVEQLI 211
           SVG  ADA+K  K I ++NGK   DV++L+
Sbjct: 297 SVGKWADAKKQLKKIAKMNGKSNVDVDELV 326


>Z83228-1|CAC70093.1|  568|Caenorhabditis elegans Hypothetical
           protein F52F12.1b protein.
          Length = 568

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
 Frame = -1

Query: 291 SVGIEADAEKLKKVITELNGK---DVEQLI 211
           SVG  ADA+K  K I ++NGK   DV++L+
Sbjct: 280 SVGKWADAKKQLKKIAKMNGKSNVDVDELV 309


>AF110415-1|AAF21932.1|  568|Caenorhabditis elegans organic cation
           transporter 1 protein.
          Length = 568

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
 Frame = -1

Query: 291 SVGIEADAEKLKKVITELNGK---DVEQLI 211
           SVG  ADA+K  K I ++NGK   DV++L+
Sbjct: 280 SVGKWADAKKQLKKIAKMNGKSNVDVDELV 309


>AF106589-3|AAT81179.1|  511|Caenorhabditis elegans Hypothetical
           protein Y44E3A.4 protein.
          Length = 511

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +2

Query: 215 SCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTASKYA 361
           S ST  P+S+ +   + +   SIP+     S+   +  + PPS+ASK A
Sbjct: 436 SISTVNPMSASMFVPATAKEISIPSNSSATSSPFKSSSIAPPSSASKPA 484


>AC024882-7|AAF60924.1|  285|Caenorhabditis elegans Hypothetical
           protein Y9C9A.12 protein.
          Length = 285

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 412 RHYTFRVN*DLKNALRGRVFTGCAGWQDHASC 317
           +H+T R++ D+KN  R + FT      +  SC
Sbjct: 98  KHFTIRISDDIKNKNRDQCFTRILNTLNSKSC 129


>U53153-9|AAC69041.1|  511|Caenorhabditis elegans Hypothetical
           protein T19A5.5 protein.
          Length = 511

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -2

Query: 404 HVSCQLGLKKCVTWPRIYWLC 342
           H  CQ G  +CV  PR  W C
Sbjct: 55  HFKCQTGQNQCVPDPRGRWNC 75


>Z75712-1|CAB00040.1|  724|Caenorhabditis elegans Hypothetical
           protein K04G2.3 protein.
          Length = 724

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = -1

Query: 375 MRYVAAYLLAVLGGKTTPAAAD-VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGR 199
           ++Y ++  L  LG   T    + +E  +S++GI+ D ++  KV++   G  ++ L A+  
Sbjct: 172 LQYNSSVDLKYLGQNVTVTPEEPIESKMSAMGIDDDKKRNSKVVSTAVGYKIQILNASAE 231

Query: 198 EKLSSM 181
              S +
Sbjct: 232 GSTSDV 237


>Z22179-9|CAD90178.1|  428|Caenorhabditis elegans Hypothetical
           protein F58A4.7c protein.
          Length = 428

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
 Frame = +2

Query: 167 PPPT--GIDDSFSRPAAIS------CSTSLPLSSVITFLSFSASASIPTELRIFSTSAAA 322
           PPPT   ++ +  RP  +        S SL   S +T      S ++PT+  I   +AAA
Sbjct: 300 PPPTLPSLETTVIRPTPLPPISVEISSPSLSTPSPLTAAPIIFSTAVPTQSSILFQTAAA 359

Query: 323 GVVLPPSTAS 352
            V    ST +
Sbjct: 360 AVTSAMSTGN 369


>Z22179-8|CAA80170.2|  431|Caenorhabditis elegans Hypothetical
           protein F58A4.7b protein.
          Length = 431

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
 Frame = +2

Query: 167 PPPT--GIDDSFSRPAAIS------CSTSLPLSSVITFLSFSASASIPTELRIFSTSAAA 322
           PPPT   ++ +  RP  +        S SL   S +T      S ++PT+  I   +AAA
Sbjct: 302 PPPTLPSLETTVIRPTPLPPISVEISSPSLSTPSPLTAAPIIFSTAVPTQSSILFQTAAA 361

Query: 323 GVVLPPSTAS 352
            V    ST +
Sbjct: 362 AVTSAMSTGN 371


>Z22179-7|CAA80167.2|  429|Caenorhabditis elegans Hypothetical
           protein F58A4.7a protein.
          Length = 429

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
 Frame = +2

Query: 167 PPPT--GIDDSFSRPAAIS------CSTSLPLSSVITFLSFSASASIPTELRIFSTSAAA 322
           PPPT   ++ +  RP  +        S SL   S +T      S ++PT+  I   +AAA
Sbjct: 300 PPPTLPSLETTVIRPTPLPPISVEISSPSLSTPSPLTAAPIIFSTAVPTQSSILFQTAAA 359

Query: 323 GVVLPPSTAS 352
            V    ST +
Sbjct: 360 AVTSAMSTGN 369


>U40802-4|AAK19010.1|   80|Caenorhabditis elegans Hypothetical
           protein ZC477.4 protein.
          Length = 80

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +2

Query: 203 PAAISCSTSLPLSSVITFLSFSASASIPTELRI 301
           P A S S+S   SS I   S S SAS+  ELR+
Sbjct: 11  PGASSSSSSSTASSQIRPPSLSLSASLSEELRV 43


>AL032644-4|CAA21665.1|  490|Caenorhabditis elegans Hypothetical
           protein Y51H1A.4 protein.
          Length = 490

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 306 EKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 166
           EK      +EAD   + ++I +   + VE L+ A +E+     VGGG
Sbjct: 101 EKTTFQCEMEADNSGVTEMIEKRYTQHVESLLTARKERKRRHRVGGG 147


>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
           on autosome protein2 protein.
          Length = 1758

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 233 PLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTASKYAA 364
           PLSS+ +  S +A +SI        ++ ++ +  PPST+S   A
Sbjct: 201 PLSSITSISSSAAGSSISAPSTSQPSTTSSLITSPPSTSSSSMA 244


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,538,832
Number of Sequences: 27780
Number of extensions: 90613
Number of successful extensions: 331
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)