Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10d07
(384 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB032251-1|BAA89208.1| 2781|Homo sapiens bromodomain PHD finger ... 30 2.9
L41840-1|AAC41758.1| 3224|Homo sapiens nucleoporin protein. 29 5.1
D42063-1|BAA07662.1| 3224|Homo sapiens RanBP2 (Ran-binding prote... 29 5.1
AY282495-1|AAP22284.1| 2764|Homo sapiens bromodomain PHD finger ... 29 5.1
AC010095-2|AAY14984.1| 3224|Homo sapiens unknown protein. 29 5.1
AB209483-1|BAD92720.1| 3138|Homo sapiens RAN binding protein 2 v... 29 5.1
AJ580919-1|CAE45645.1| 119|Homo sapiens voltage-gated sodium ch... 29 6.8
X82835-1|CAA58042.1| 1977|Homo sapiens sodium channel alpha subu... 28 8.9
M94055-1|AAA18895.1| 2005|Homo sapiens voltage-gated sodium chan... 28 8.9
M81758-1|AAA60554.1| 1836|Homo sapiens sodium channel alpha subu... 28 8.9
M77235-1|AAA58644.1| 2016|Homo sapiens sodium channel alpha subu... 28 8.9
L04236-1|AAB59624.1| 1836|Homo sapiens skeletal muscle sodium ch... 28 8.9
L01983-1|AAA75557.1| 1835|Homo sapiens sodium channel alpha subu... 28 8.9
EF629347-1|ABR15764.1| 1998|Homo sapiens Nav1.5 Na+ channel prot... 28 8.9
EF629346-1|ABR15763.1| 2016|Homo sapiens Nav1.5 Na+ channel prot... 28 8.9
EF179185-1|ABN05288.1| 2015|Homo sapiens sodium channel, voltage... 28 8.9
DQ857292-1|ABI51981.1| 1977|Homo sapiens voltage-gated sodium ch... 28 8.9
DQ784809-1|ABQ01244.1| 2016|Homo sapiens sodium channel protein ... 28 8.9
AY212253-1|AAO83647.1| 1836|Homo sapiens skeletal muscle voltage... 28 8.9
AY148488-1|AAN61120.1| 2015|Homo sapiens cardiac sodium channel ... 28 8.9
AY043484-1|AAK95360.1| 1998|Homo sapiens voltage-gated sodium ch... 28 8.9
AY038064-1|AAK74065.1| 2015|Homo sapiens voltage-gated sodium ch... 28 8.9
AK131246-1|BAD18426.1| 607|Homo sapiens protein ( Homo sapiens ... 28 8.9
AJ580918-1|CAE45644.1| 119|Homo sapiens voltage-gated sodium ch... 28 8.9
AJ251507-1|CAB85895.1| 1951|Homo sapiens type III sodium channel... 28 8.9
AF482988-1|AAO91669.1| 2015|Homo sapiens cardiac sodium channel ... 28 8.9
AF330135-2|AAG53415.1| 1951|Homo sapiens voltage-gated sodium ch... 28 8.9
AF330135-1|AAG53414.1| 1951|Homo sapiens voltage-gated sodium ch... 28 8.9
AF327246-2|AAG53413.1| 2005|Homo sapiens voltage-gated sodium ch... 28 8.9
AF327246-1|AAG53412.1| 2005|Homo sapiens voltage-gated sodium ch... 28 8.9
AF225988-1|AAF35390.1| 1980|Homo sapiens voltage-gated sodium ch... 28 8.9
AF225987-1|AAK00219.1| 2000|Homo sapiens voltage-gated sodium ch... 28 8.9
AF225986-1|AAK00218.1| 1951|Homo sapiens voltage-gated sodium ch... 28 8.9
AF225985-1|AAK00217.1| 1999|Homo sapiens voltage-gated sodium ch... 28 8.9
AF050736-1|AAD15789.1| 1980|Homo sapiens voltage-gated sodium ch... 28 8.9
AF035686-1|AAC29515.1| 1366|Homo sapiens voltage-gated sodium ch... 28 8.9
AF035685-1|AAC29514.1| 1366|Homo sapiens voltage-gated sodium ch... 28 8.9
AC108146-1|AAY14794.1| 1146|Homo sapiens unknown protein. 28 8.9
AC013463-1|AAY15072.1| 2000|Homo sapiens unknown protein. 28 8.9
AC011303-1|AAY14971.1| 2005|Homo sapiens unknown protein. 28 8.9
AC010127-1|AAX81984.1| 1998|Homo sapiens unknown protein. 28 8.9
AB208888-1|BAD92125.1| 1315|Homo sapiens Sodium channel protein ... 28 8.9
AB208866-1|BAD92103.1| 1576|Homo sapiens voltage-gated sodium ch... 28 8.9
AB158470-1|BAD12085.1| 1962|Homo sapiens TTX-resistant sodium ch... 28 8.9
AB158469-1|BAD12084.1| 2016|Homo sapiens TTX-resistant sodium ch... 28 8.9
AB098335-1|BAC45228.1| 1981|Homo sapiens Voltage-gated sodium ch... 28 8.9
AB093549-1|BAC21102.1| 1998|Homo sapiens Voltage-gated sodium ch... 28 8.9
AB093548-1|BAC21101.1| 2009|Homo sapiens voltage-gated sodium ch... 28 8.9
AB027567-1|BAA78033.1| 1980|Homo sapiens sodium channel protein. 28 8.9
>AB032251-1|BAA89208.1| 2781|Homo sapiens bromodomain PHD finger
transcription factor protein.
Length = 2781
Score = 29.9 bits (64), Expect = 2.9
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -1
Query: 228 QLASSPRRFHFSTSIYRIYVQKVW*LDVWQRLPSDTKSYKETSKRVKEK 82
Q+ S PR F + +I V+ V L +W+ T+ ++ TS +EK
Sbjct: 673 QMCSKPREFALALAILECAVKPVVMLPIWREFLGHTRLHRMTSIEREEK 721
>L41840-1|AAC41758.1| 3224|Homo sapiens nucleoporin protein.
Length = 3224
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 325 VLRKRGDEKPSDIVMFHQVRNPLPQPGAFLKIPIGFESS 209
+L RGD+ + V PLP+PG F K PI +S
Sbjct: 953 ILSPRGDDYFNYNVQQTSTNPPLPEPGYFTKPPIAAHAS 991
>D42063-1|BAA07662.1| 3224|Homo sapiens RanBP2 (Ran-binding protein 2)
protein.
Length = 3224
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 325 VLRKRGDEKPSDIVMFHQVRNPLPQPGAFLKIPIGFESS 209
+L RGD+ + V PLP+PG F K PI +S
Sbjct: 953 ILSPRGDDYFNYNVQQTSTNPPLPEPGYFTKPPIAAHAS 991
>AY282495-1|AAP22284.1| 2764|Homo sapiens bromodomain PHD finger
transcription factor protein.
Length = 2764
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -1
Query: 228 QLASSPRRFHFSTSIYRIYVQKVW*LDVWQRLPSDTKSYKETSKRVKEK 82
Q+ S PR F + +I V+ V L +W+ T+ ++ TS +EK
Sbjct: 799 QMCSKPREFALALAILECAVKPVVMLPIWRESLGHTRLHRMTSIEREEK 847
>AC010095-2|AAY14984.1| 3224|Homo sapiens unknown protein.
Length = 3224
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 325 VLRKRGDEKPSDIVMFHQVRNPLPQPGAFLKIPIGFESS 209
+L RGD+ + V PLP+PG F K PI +S
Sbjct: 953 ILSPRGDDYFNYNVQQTSTNPPLPEPGYFTKPPIAAHAS 991
>AB209483-1|BAD92720.1| 3138|Homo sapiens RAN binding protein 2
variant protein.
Length = 3138
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 325 VLRKRGDEKPSDIVMFHQVRNPLPQPGAFLKIPIGFESS 209
+L RGD+ + V PLP+PG F K PI +S
Sbjct: 867 ILSPRGDDYFNYNVQQTSTNPPLPEPGYFTKPPIAAHAS 905
>AJ580919-1|CAE45645.1| 119|Homo sapiens voltage-gated sodium
channel alpha subunit Nav1.7 protein.
Length = 119
Score = 28.7 bits (61), Expect = 6.8
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 22 NSVGALGNHTLVLAIIVFIFAVVGMQLFGK 51
>X82835-1|CAA58042.1| 1977|Homo sapiens sodium channel alpha subunit
protein.
Length = 1977
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 850 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 879
>M94055-1|AAA18895.1| 2005|Homo sapiens voltage-gated sodium channel
protein.
Length = 2005
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 876 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 905
>M81758-1|AAA60554.1| 1836|Homo sapiens sodium channel alpha subunit
protein.
Length = 1836
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 695 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 724
>M77235-1|AAA58644.1| 2016|Homo sapiens sodium channel alpha subunit
protein.
Length = 2016
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 834 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 863
>L04236-1|AAB59624.1| 1836|Homo sapiens skeletal muscle sodium
channel alpha subunit protein.
Length = 1836
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 695 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 724
>L01983-1|AAA75557.1| 1835|Homo sapiens sodium channel alpha subunit
protein.
Length = 1835
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 695 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 724
>EF629347-1|ABR15764.1| 1998|Homo sapiens Nav1.5 Na+ channel
protein.
Length = 1998
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 834 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 863
>EF629346-1|ABR15763.1| 2016|Homo sapiens Nav1.5 Na+ channel
protein.
Length = 2016
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 834 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 863
>EF179185-1|ABN05288.1| 2015|Homo sapiens sodium channel,
voltage-gated, type V, alpha (long QT syndrome 3)
protein.
Length = 2015
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 834 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 863
>DQ857292-1|ABI51981.1| 1977|Homo sapiens voltage-gated sodium
channel Nav1.7 protein.
Length = 1977
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 850 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 879
>DQ784809-1|ABQ01244.1| 2016|Homo sapiens sodium channel protein
type V alpha subunit protein.
Length = 2016
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 834 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 863
>AY212253-1|AAO83647.1| 1836|Homo sapiens skeletal muscle
voltage-dependent sodium channel type IV alpha subunit
protein.
Length = 1836
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 695 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 724
>AY148488-1|AAN61120.1| 2015|Homo sapiens cardiac sodium channel
alpha subunit Nav1.5 protein.
Length = 2015
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 834 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 863
>AY043484-1|AAK95360.1| 1998|Homo sapiens voltage-gated sodium
channel type I protein.
Length = 1998
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 874 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 903
>AY038064-1|AAK74065.1| 2015|Homo sapiens voltage-gated sodium
channel type V alpha subunit jejunal variant protein.
Length = 2015
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 834 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 863
>AK131246-1|BAD18426.1| 607|Homo sapiens protein ( Homo sapiens
cDNA FLJ16168 fis, clone BRHIP2002722. ).
Length = 607
Score = 28.3 bits (60), Expect = 8.9
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -3
Query: 349 YWTKLCVIVLRKRGDEKPSDIVMFH-QVRNPLPQPGAFLK 233
YW LC + R+RG+ +P V +++ PL + AF++
Sbjct: 67 YWDFLCTALRRQRGNMEPIHFVRSQDKLKTPLGKGRAFIR 106
>AJ580918-1|CAE45644.1| 119|Homo sapiens voltage-gated sodium
channel alpha subunit Nav1.7 protein.
Length = 119
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 22 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 51
>AJ251507-1|CAB85895.1| 1951|Homo sapiens type III sodium channel
protein protein.
Length = 1951
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 828 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 857
>AF482988-1|AAO91669.1| 2015|Homo sapiens cardiac sodium channel
alpha subunit protein.
Length = 2015
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 834 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 863
>AF330135-2|AAG53415.1| 1951|Homo sapiens voltage-gated sodium
channel type III alpha subunit protein.
Length = 1951
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 828 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 857
>AF330135-1|AAG53414.1| 1951|Homo sapiens voltage-gated sodium
channel type III alpha subunit protein.
Length = 1951
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 828 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 857
>AF327246-2|AAG53413.1| 2005|Homo sapiens voltage-gated sodium
channel type II alpha subunit protein.
Length = 2005
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 876 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 905
>AF327246-1|AAG53412.1| 2005|Homo sapiens voltage-gated sodium
channel type II alpha subunit protein.
Length = 2005
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 876 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 905
>AF225988-1|AAF35390.1| 1980|Homo sapiens voltage-gated sodium
channel alpha subunit protein.
Length = 1980
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 870 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 899
>AF225987-1|AAK00219.1| 2000|Homo sapiens voltage-gated sodium
channel alpha subunit SCN3A protein.
Length = 2000
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 877 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 906
>AF225986-1|AAK00218.1| 1951|Homo sapiens voltage-gated sodium
channel alpha subunit splice variant SCN3A-s protein.
Length = 1951
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 828 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 857
>AF225985-1|AAK00217.1| 1999|Homo sapiens voltage-gated sodium
channel alpha subunit SCN1A protein.
Length = 1999
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 874 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 903
>AF050736-1|AAD15789.1| 1980|Homo sapiens voltage-gated sodium
channel alpha subunit protein.
Length = 1980
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 870 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 899
>AF035686-1|AAC29515.1| 1366|Homo sapiens voltage-gated sodium
channel, subtype III protein.
Length = 1366
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 828 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 857
>AF035685-1|AAC29514.1| 1366|Homo sapiens voltage-gated sodium
channel, subtype III protein.
Length = 1366
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 828 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 857
>AC108146-1|AAY14794.1| 1146|Homo sapiens unknown protein.
Length = 1146
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 850 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 879
>AC013463-1|AAY15072.1| 2000|Homo sapiens unknown protein.
Length = 2000
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 877 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 906
>AC011303-1|AAY14971.1| 2005|Homo sapiens unknown protein.
Length = 2005
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 876 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 905
>AC010127-1|AAX81984.1| 1998|Homo sapiens unknown protein.
Length = 1998
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 874 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 903
>AB208888-1|BAD92125.1| 1315|Homo sapiens Sodium channel protein
type II alpha subunit variant protein.
Length = 1315
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 883 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 912
>AB208866-1|BAD92103.1| 1576|Homo sapiens voltage-gated sodium
channel type V alpha isoform b variant protein.
Length = 1576
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 413 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 442
>AB158470-1|BAD12085.1| 1962|Homo sapiens TTX-resistant sodium
channel splicing variant protein.
Length = 1962
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 834 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 863
>AB158469-1|BAD12084.1| 2016|Homo sapiens TTX-resistant sodium
channel protein.
Length = 2016
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 834 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 863
>AB098335-1|BAC45228.1| 1981|Homo sapiens Voltage-gated sodium
channel alpha 1 subunit protein.
Length = 1981
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 857 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 886
>AB093549-1|BAC21102.1| 1998|Homo sapiens Voltage-gated sodium
channel alpha1 subunit protein.
Length = 1998
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 874 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 903
>AB093548-1|BAC21101.1| 2009|Homo sapiens voltage-gated sodium
channel alpha1 subunit protein.
Length = 2009
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 885 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 914
>AB027567-1|BAA78033.1| 1980|Homo sapiens sodium channel protein.
Length = 1980
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 138
N + LG TLVLA I F++ G +FGK
Sbjct: 870 NSVGALGNLTLVLAIIVFIFAVVGMQLFGK 899
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,295,451
Number of Sequences: 237096
Number of extensions: 997747
Number of successful extensions: 1791
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 1775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1791
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2583773550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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