Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10d06
(655 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 23 2.6
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 23 2.6
L10710-1|AAA27730.1| 382|Apis mellifera hyaluronidase protein. 23 3.4
AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex det... 23 3.4
AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase pro... 23 3.4
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 22 4.5
DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex det... 22 6.0
DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex det... 22 6.0
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 22 6.0
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 22 6.0
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 22 6.0
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 22 6.0
AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein... 21 7.9
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 21 7.9
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 21 7.9
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.0 bits (47), Expect = 2.6
Identities = 7/23 (30%), Positives = 15/23 (65%)
Frame = -3
Query: 98 HNYHFNFYSNSINNSRMQQLLLF 30
+NY +N+ +N+ NN+ + L +
Sbjct: 92 NNYKYNYNNNNYNNNNYNKKLYY 114
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.0 bits (47), Expect = 2.6
Identities = 7/23 (30%), Positives = 15/23 (65%)
Frame = -3
Query: 98 HNYHFNFYSNSINNSRMQQLLLF 30
+NY +N+ +N+ NN+ + L +
Sbjct: 92 NNYKYNYNNNNYNNNNYNKKLYY 114
>L10710-1|AAA27730.1| 382|Apis mellifera hyaluronidase protein.
Length = 382
Score = 22.6 bits (46), Expect = 3.4
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +3
Query: 474 NVLNSLCNFFEMKFHIIKCRFGINQNLYGINNNPKIVLIQFIGKF 608
NV +C+ + ++F + ++GI QN +I ++ G F
Sbjct: 48 NVPTFMCHKYGLRFEEVSEKYGILQNWMDKFRGEEIAILYDPGMF 92
>AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 22.6 bits (46), Expect = 3.4
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -3
Query: 260 TRNTLYFNTIYSNY*NHQKYYS 195
+ T++ N Y+NY N + YY+
Sbjct: 308 SNKTIHNNNNYNNYNNKKLYYN 329
>AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase
protein.
Length = 588
Score = 22.6 bits (46), Expect = 3.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 272 SYNSTRNTLYFNTIYSNY*NHQKYYSTWNFSST 174
+Y+S NTL + + SN + K+ + N SST
Sbjct: 300 AYSSLENTLKYYEVGSNVPFNFKFITDANSSST 332
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 22.2 bits (45), Expect = 4.5
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -3
Query: 290 YKSHIYSYNSTRNTLYFNTIYSNY*NHQK--YYSTWN 186
+ ++ Y YN N N +NY N+ K YY+ N
Sbjct: 324 HNNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNIIN 360
Score = 21.4 bits (43), Expect = 7.9
Identities = 6/15 (40%), Positives = 12/15 (80%)
Frame = -3
Query: 98 HNYHFNFYSNSINNS 54
+NY +N+ +N+ NN+
Sbjct: 327 NNYKYNYNNNNYNNN 341
>DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 21.8 bits (44), Expect = 6.0
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 299 N*KYKSHIYSYNSTRNTLYFNTIYSNY*NHQKYY 198
N KY S+ +YN+ N Y N +NY K Y
Sbjct: 88 NYKY-SNYNNYNNNYNNNYNNNYNNNYKKLYKNY 120
>DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 21.8 bits (44), Expect = 6.0
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 299 N*KYKSHIYSYNSTRNTLYFNTIYSNY*NHQKYY 198
N KY S+ +YN+ N Y N +NY K Y
Sbjct: 88 NYKY-SNYNNYNNNYNNNYNNNYNNNYKKLYKNY 120
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 21.8 bits (44), Expect = 6.0
Identities = 13/59 (22%), Positives = 23/59 (38%)
Frame = -3
Query: 230 YSNY*NHQKYYSTWNFSSTINS*HNCRTFXXXXXXXXXTXYIILHNYHFNFYSNSINNS 54
Y N +++KY TW S + +NY +N+ +N+ NN+
Sbjct: 50 YKNENSYRKYRETWKERSRDRTERERSREPKIISSLSNRTIHNNNNYKYNYNNNNYNNN 108
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.8 bits (44), Expect = 6.0
Identities = 13/59 (22%), Positives = 23/59 (38%)
Frame = -3
Query: 230 YSNY*NHQKYYSTWNFSSTINS*HNCRTFXXXXXXXXXTXYIILHNYHFNFYSNSINNS 54
Y N +++KY TW S + +NY +N+ +N+ NN+
Sbjct: 50 YKNENSYRKYRETWKERSRDRTERERSREPKIISSLSNKTIHNNNNYKYNYNNNNYNNN 108
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.8 bits (44), Expect = 6.0
Identities = 13/59 (22%), Positives = 23/59 (38%)
Frame = -3
Query: 230 YSNY*NHQKYYSTWNFSSTINS*HNCRTFXXXXXXXXXTXYIILHNYHFNFYSNSINNS 54
Y N +++KY TW S + +NY +N+ +N+ NN+
Sbjct: 50 YKNENSYRKYRETWKERSRDRTERERSREPKIISSLSNKTIHNNNNYKYNYNNNNYNNN 108
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.8 bits (44), Expect = 6.0
Identities = 13/59 (22%), Positives = 23/59 (38%)
Frame = -3
Query: 230 YSNY*NHQKYYSTWNFSSTINS*HNCRTFXXXXXXXXXTXYIILHNYHFNFYSNSINNS 54
Y N +++KY TW S + +NY +N+ +N+ NN+
Sbjct: 50 YKNENSYRKYRETWKERSRDRTERERSREPKIISSLSNKTIHNNNNYKYNYNNNNYNNN 108
>AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein
protein.
Length = 411
Score = 21.4 bits (43), Expect = 7.9
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -3
Query: 272 SYNSTRNTLYFNTIYSNY 219
S+ T N YF+ Y NY
Sbjct: 209 SWRITHNFFYFDPRYGNY 226
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.4 bits (43), Expect = 7.9
Identities = 7/23 (30%), Positives = 15/23 (65%)
Frame = -3
Query: 116 TXYIILHNYHFNFYSNSINNSRM 48
T I +NY++ Y+N+ N+ ++
Sbjct: 301 TKIISSNNYNYKNYNNNYNSKKL 323
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 7.9
Identities = 7/23 (30%), Positives = 15/23 (65%)
Frame = -3
Query: 116 TXYIILHNYHFNFYSNSINNSRM 48
T I +NY++ Y+N+ N+ ++
Sbjct: 312 TKIISSNNYNYKNYNNNYNSKKL 334
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,608
Number of Sequences: 438
Number of extensions: 2240
Number of successful extensions: 31
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -