Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10d05
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    29   1.0  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    27   2.4  
SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   4.2  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    27   4.2  
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    26   5.6  
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    26   5.6  
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    25   9.7  

>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = -2

Query: 418 NDKQYRVMERIVISSPTKCLTTVKKRKDEKIFNAPPIKRTKKILT*NYETRDFNTN 251
           N  Q  V     + SPT+  T  +  K+E + N PP++R+    T NY++    T+
Sbjct: 287 NSVQQPVAYHAFVQSPTENGTLPQLPKNESVVNPPPLRRSS---TMNYKSVSTTTS 339


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 21/65 (32%), Positives = 32/65 (49%)
 Frame = -2

Query: 661 RFQIQEIIYPARNNNVKLEVELKDSEDHDKIAVAAVLQLSNADITNLLKYIKTRLFENSM 482
           R    E IY       K   E+ + E  DK++ + VL++ ++    LLK+  T  FEN +
Sbjct: 463 RLNTAEYIYRTTIELEKRFQEISNKEFKDKMSFSEVLEVISSSRGTLLKF-ATGKFEN-V 520

Query: 481 LKDDL 467
           L  DL
Sbjct: 521 LNSDL 525


>SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 125

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 553 LQLSNADITNLLKYIKTRLFENSMLKDDLLKGK 455
           + L+ AD T +L+++KT + + S + DD +  K
Sbjct: 69  IDLTKADQTEVLQFLKTYVEDESFVGDDFVMPK 101


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 351 TVVRHLVGLLITILSITRYCLSLKGLNKA 437
           TV  ++VGL++TIL+   +C S    N+A
Sbjct: 206 TVGMYVVGLVLTILTYVFFCASSCSFNQA 234


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 757 LEALERNAVWLNTLVGNQN 701
           +E L+ + +WLNT +G +N
Sbjct: 205 VEYLDHHCIWLNTCIGRRN 223


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 7/22 (31%), Positives = 17/22 (77%)
 Frame = +2

Query: 542 AKLQDCGHCYFVVIFRVFQLDF 607
           ++L++C  C++ V+ RV++ +F
Sbjct: 568 SRLRECSFCFYAVLARVYKEEF 589


>SPAC23D3.12 |||inorganic phosphate transporter
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = +1

Query: 37 KNRNENNIVSLYSVAASPLMR 99
          KN NENN VSL  VA S   R
Sbjct: 13 KNSNENNEVSLADVAESDTRR 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,187,961
Number of Sequences: 5004
Number of extensions: 65040
Number of successful extensions: 191
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)