Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10d04
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    28   1.8  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    28   1.8  
SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.4  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    27   2.4  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.4  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    27   3.2  
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom...    27   4.2  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    27   4.2  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    26   7.4  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    26   7.4  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    26   7.4  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    26   7.4  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    25   9.7  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    25   9.7  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   9.7  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    25   9.7  

>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
 Frame = -1

Query: 725 AYHGNRLENFYTI-LNFGLQQHLNKNTSL--GNGVYLSPELS 609
           AYHG+R +N+Y +  +FG ++ L + +    G G+YL  +++
Sbjct: 100 AYHGHRPKNYYRLNPHFGNEEDLKELSDALHGKGMYLMVDVA 141


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 526 SHKATQDK*PPIQLAPHPKP 585
           SHKAT D  PP +  P P P
Sbjct: 313 SHKATSDAVPPAEAKPEPVP 332


>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 255

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 497 N*SLRVHQPLRTRLHKISDLR-YNSPPIRSLHDCEVLSHL 613
           N   R  +P++    +IS LR +N PPI+  H+  +L  +
Sbjct: 27  NPMFRSLRPIQKSFSEISILRVFNKPPIKKFHNSNILKDI 66


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = -1

Query: 809 HIFQVISSNKSTVELKWKEL-SKNHNVFYAYHGNRLENFYTILNFGLQQHLNKNTSLGNG 633
           H+FQ  S  +S+VELK + + +K   + ++ +    E+ +  L+  + + +   T L   
Sbjct: 650 HLFQAQSDFESSVELKDRSIVTKTTIMSWSKYQGTKESLFQFLSIYIPECMLPFTKLLKS 709

Query: 632 VYLSPELSATIPHS 591
           +Y SP+    I +S
Sbjct: 710 IY-SPDCPTNIQNS 722


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -1

Query: 746 KNHNVFYAYHGNRLENFYTILNFGLQQHLNKNTSLGNGVYLSPELSATIPHSH 588
           K HN   +++GNR    ++I+N GL  +L K+ +      L+ +  AT  + H
Sbjct: 339 KRHNSSQSFYGNRSTTNFSIINSGL--YLKKDAAKN---LLAKQFDATYSYYH 386


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 493 W*LIPSGASTTSHKATQDK*PPIQLAPHPK 582
           W  +PSG +T S +A QDK    +L  H K
Sbjct: 523 WNNVPSGDNTLSTEALQDKKKSEELTAHSK 552


>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
           Pof7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +2

Query: 611 LVLATGILHYPAKYSCSNAVVSQN*ESYKSSPNDFRDTHKIHYDFWTVLSTLVRQ*IC 784
           ++L   +LHY       +A+ S+   +   S N +R  HK+H D  ++   L R  +C
Sbjct: 19  ILLKKALLHY------KDAIKSEREGNLGESLNKYRLAHKVHEDVESIYRRLERLQLC 70


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -1

Query: 719 HGNRLENFYTILNFGLQQHLNKNTSLGNGV-YLSPELSATIPHSHGGFGWGASCIGGHLS 543
           HG ++  ++   N      L K   +G  V +L+   +  IPH  GG G G  C+  HL+
Sbjct: 735 HGGQV--YFDGANMNAMVGLCKAGDIGADVCHLNLHKTFCIPHGGGGPGVGPICVKKHLA 792


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 134 YNRIMDLELDAFDSLTGLDCLTYLIHSFYQ*LCIHFL 24
           YN IM++    ++SL  L  L   ++ F+   CIH +
Sbjct: 684 YNTIMEVWNIKYNSLNALARLLSALYKFHPEFCIHVI 720


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1225

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 581  FGWGASCIGGHL-SCVALCEVVDAPEGINYQKPVSNEGDGLY 459
            F W       HL SCV  C+++   +  NY+ P+ ++   LY
Sbjct: 1106 FDWDFGNKDDHLGSCVIDCKLLQQQQQTNYEIPLDSKQGVLY 1147


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = +2

Query: 527 RTRLHKISDLRYNSPPIRSLHDCEVLSHLVLATGILHYPAKYSCSNAVVSQN*ESYKSSP 706
           RT  H I  L  N     S+H C++   +   T    YP+K + SN  VS +  S+ S  
Sbjct: 338 RTITHFIKKLVCNEC---SMHPCDIEEIIAWRTLNSLYPSKATLSNNFVSTSDLSFWSRE 394

Query: 707 NDFRDTHKIH-YDFWTVLSTL 766
              R   K + + FW   S L
Sbjct: 395 YFVRSKGKSYLHCFWCSASWL 415


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 148 LGYNSTIESWTWNWMPLIH*LDWIA 74
           L Y S +E  T+N  P+IH L +IA
Sbjct: 6   LDYLSALEDLTFNSKPIIHTLTYIA 30


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 338 MRVVSRKPTDNGFSLSH 388
           MR+ S  P+ NGFS++H
Sbjct: 457 MRLSSEPPSSNGFSIAH 473


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 503 SLRVHQPLRTRLHKISDLRYNSPPIRSLHDCE 598
           S+ +H   RT  H     R+N   I SL +CE
Sbjct: 165 SMDIHSRYRTEAHSDVTARFNERFILSLGNCE 196


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 61  IKYVRQSNPVNESKASNSKSMILLYCY-TLVLARAMSI 171
           +KY++  +   ESK SN    IL   Y + VLA A S+
Sbjct: 877 LKYIQHRDFTKESKDSNDTESILKNSYSSYVLALAYSV 914


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = +2

Query: 629 ILHYPAKYSCSNAVVSQN*ESYKSSPNDFRDTHKIHYDFWTVLST 763
           I H   + SC  A V    ESY+ SP        + YD W V  T
Sbjct: 534 IYHAALEASCEIAQVEGTYESYEGSP---ASQGILQYDMWNVNPT 575


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,562,080
Number of Sequences: 5004
Number of extensions: 78532
Number of successful extensions: 221
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)