Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10d04
         (815 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0004 - 18269416-18269473,18270319-18270509,18271061-182720...    32   0.47 
04_01_0111 - 1136354-1136793,1136878-1136959,1137574-1137657,113...    29   4.4  
11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,400...    29   5.8  
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488...    29   5.8  
04_03_0167 - 12178587-12179203,12179243-12179375,12179540-121797...    28   7.7  
02_04_0431 - 22841708-22842571,22842659-22842743,22842796-228428...    28   7.7  

>11_05_0004 -
           18269416-18269473,18270319-18270509,18271061-18272004,
           18272083-18272254,18272332-18272407,18272498-18272617,
           18272795-18272959,18273048-18273138,18273673-18273757,
           18273873-18274043,18274151-18274207,18274290-18274385,
           18275223-18275365,18275464-18275530
          Length = 811

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
 Frame = -1

Query: 815 PQHIFQVISSNKSTVELKWKELSKNHNVF-----YAYHGNRL----ENFYTILNFGLQQH 663
           P+ I    S+   TV  ++++   NHN+F     +     RL    +N+  I   G+   
Sbjct: 513 PEQITAGHSNFWHTVNAQYQDQQSNHNMFPSSWSFMPPNTRLGLNKQNYSMIQEAGVLSQ 572

Query: 662 LNKNTSLGNGVYLSPELSATIPHSHGGFG 576
              NT  GNGVY +     T  +S G FG
Sbjct: 573 RPGNTKFGNGVYAALPGRGTEQYSGGWFG 601


>04_01_0111 -
           1136354-1136793,1136878-1136959,1137574-1137657,
           1137749-1137931,1138263-1138437,1138539-1138777
          Length = 400

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +2

Query: 188 CSNIVLVDCWQSQW*--PITTRNREESIAICDVLANDENHHFYSNSLREISKMRV 346
           C+    VD + S W   P+ +RN + S+  C+VL     HH      REI+K+ V
Sbjct: 237 CNKPRRVDVYYSSWCIRPVESRNGDGSMTACEVLL---FHHEEMGIPREIAKLGV 288


>11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,
            4004474-4004556,4004661-4004775,4005309-4005400,
            4005558-4005612,4005689-4005834,4005888-4006001,
            4006149-4006342,4006985-4007112,4008526-4008583,
            4009800-4009876,4010214-4010263,4010336-4010515,
            4010633-4010731,4010816-4011133,4011221-4011281,
            4011693-4012781,4012951-4013005,4013133-4013291,
            4013923-4014442
          Length = 1406

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 627  PVARTKCDNTSQSWRLRMGGE 565
            P+A   CD+ S  W+LR GG+
Sbjct: 1096 PMANLLCDSFSDDWQLRSGGD 1116


>04_04_1551 -
           34348110-34348225,34348468-34348606,34348658-34348896,
           34349042-34349140,34349207-34350188,34350737-34350832,
           34350936-34351064,34351253-34351332,34351420-34351661,
           34351743-34352692
          Length = 1023

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -1

Query: 758 KELSKNHNVFYAYHGNRLENFYTIL--NFGLQQHLNKNTSLGNGVYLSPE 615
           KE   + NV Y + G+R  +   IL   FG      +   L  GVYLSPE
Sbjct: 262 KEERGDANVRYGWLGSRKNDIVRILINGFGNNGKPAEKAGLSAGVYLSPE 311


>04_03_0167 -
           12178587-12179203,12179243-12179375,12179540-12179726,
           12179800-12179963,12180016-12180234
          Length = 439

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 611 LVLATGILHYPAKYSCSNAVVSQN 682
           L LA  ++ YPAKYSC  +  +Q+
Sbjct: 398 LQLADSLVRYPAKYSCGRSGATQD 421


>02_04_0431 -
           22841708-22842571,22842659-22842743,22842796-22842869,
           22842953-22843002,22843086-22843167,22843941-22843987,
           22844089-22844131,22844219-22844299,22844413-22844458,
           22844557-22844603,22844709-22844774,22845030-22845096,
           22845194-22845279
          Length = 545

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -1

Query: 704 ENFYTILNFGLQQHLNKN---TSLGNGVYLSPELSATIPHSHGGFGWGASC 561
           +N   + +FGL + L ++   T +G   Y+ PE+ A IP+ +    W   C
Sbjct: 140 DNNIRLADFGLAKLLMEDLASTIVGTPNYMCPEILADIPYGYKSDIWSLGC 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,963,222
Number of Sequences: 37544
Number of extensions: 481967
Number of successful extensions: 1061
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)